python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only0 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only0.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only0.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only1 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only1.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only1.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only10 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only10.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only10.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only11 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only11.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only11.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only12 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only12.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only12.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only13 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only13.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only13.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only14 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only14.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only14.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only15 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only15.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only15.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only16 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only16.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only16.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only17 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only17.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only17.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only18 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only18.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only18.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only19 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only19.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only19.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only2 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only2.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only2.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only20 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only20.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only20.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only21 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only21.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only21.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only22 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only22.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only22.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only23 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only23.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only23.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only24 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only24.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only24.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only25 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only25.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only25.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only26 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only26.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only26.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only27 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only27.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only27.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only270 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only270.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only270.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only271 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only271.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only271.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only272 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only272.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only272.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only273 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only273.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only273.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only274 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only274.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only274.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only275 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only275.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only275.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only276 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only276.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only276.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only277 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only277.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only277.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only278 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only278.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only278.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only279 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only279.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only279.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only28 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only28.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only28.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only280 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only280.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only280.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only281 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only281.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only281.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only282 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only282.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only282.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only283 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only283.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only283.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only284 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only284.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only284.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only285 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only285.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only285.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only286 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only286.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only286.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only287 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only287.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only287.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only288 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only288.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only288.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only289 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only289.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only289.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only29 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only29.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only29.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only290 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only290.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only290.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only291 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only291.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only291.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only292 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only292.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only292.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only293 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only293.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only293.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only294 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only294.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only294.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only295 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only295.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only295.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only296 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only296.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only296.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only297 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only297.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only297.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only298 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only298.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only298.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only299 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only299.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only299.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only3 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only3.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only3.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only30 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only30.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only30.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only300 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only300.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only300.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only301 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only301.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only301.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only302 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only302.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only302.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only303 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only303.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only303.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only304 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only304.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only304.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only305 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only305.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only305.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only306 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only306.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only306.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only307 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only307.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only307.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only308 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only308.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only308.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only309 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only309.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only309.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only31 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only31.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only31.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only310 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only310.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only310.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only311 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only311.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only311.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only312 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only312.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only312.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only313 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only313.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only313.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only314 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only314.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only314.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only315 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only315.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only315.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only316 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only316.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only316.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only317 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only317.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only317.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only318 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only318.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only318.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only319 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only319.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only319.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only32 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only32.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only32.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only320 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only320.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only320.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only321 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only321.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only321.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only322 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only322.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only322.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only323 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only323.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only323.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only324 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only324.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only324.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only325 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only325.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only325.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only326 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only326.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only326.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only327 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only327.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only327.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only328 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only328.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only328.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only329 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only329.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only329.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only33 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only33.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only33.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only330 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only330.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only330.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only331 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only331.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only331.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only332 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only332.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only332.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only333 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only333.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only333.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only334 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only334.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only334.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only335 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only335.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only335.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only336 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only336.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only336.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only337 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only337.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only337.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only338 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only338.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only338.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only339 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only339.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only339.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only34 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only34.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only34.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only340 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only340.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only340.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only341 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only341.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only341.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only342 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only342.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only342.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only343 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only343.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only343.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only344 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only344.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only344.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only345 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only345.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only345.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only346 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only346.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only346.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only347 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only347.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only347.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only348 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only348.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only348.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only349 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only349.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only349.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only35 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only35.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only35.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only350 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only350.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only350.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only351 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only351.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only351.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only352 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only352.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only352.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only353 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only353.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only353.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only354 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only354.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only354.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only355 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only355.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only355.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only356 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only356.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only356.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only357 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only357.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only357.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only358 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only358.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only358.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only359 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only359.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only359.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only36 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only36.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only36.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only360 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only360.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only360.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only361 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only361.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only361.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only362 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only362.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only362.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only363 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only363.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only363.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only364 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only364.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only364.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only365 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only365.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only365.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only366 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only366.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only366.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only367 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only367.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only367.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only368 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only368.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only368.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only369 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only369.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only369.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only37 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only37.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only37.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only370 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only370.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only370.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only371 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only371.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only371.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only372 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only372.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only372.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only373 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only373.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only373.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only374 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only374.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only374.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only375 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only375.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only375.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only376 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only376.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only376.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only377 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only377.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only377.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only378 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only378.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only378.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only379 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only379.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only379.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only38 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only38.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only38.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only380 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only380.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only380.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only381 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only381.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only381.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only382 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only382.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only382.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only383 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only383.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only383.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only384 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only384.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only384.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only385 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only385.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only385.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only386 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only386.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only386.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only387 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only387.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only387.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only388 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only388.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only388.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only389 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only389.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only389.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only39 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only39.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only39.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only390 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only390.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only390.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only391 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only391.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only391.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only392 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only392.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only392.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only393 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only393.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only393.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only394 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only394.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only394.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only395 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only395.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only395.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only396 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only396.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only396.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only397 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only397.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only397.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only398 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only398.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only398.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only399 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only399.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only399.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only4 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only4.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only4.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only40 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only40.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only40.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only400 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only400.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only400.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only401 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only401.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only401.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only402 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only402.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only402.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only403 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only403.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only403.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only404 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only404.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only404.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only405 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only405.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only405.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only406 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only406.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only406.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only407 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only407.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only407.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only408 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only408.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only408.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only409 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only409.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only409.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only41 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only41.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only41.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only410 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only410.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only410.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only411 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only411.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only411.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only412 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only412.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only412.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only413 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only413.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only413.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only414 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only414.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only414.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only415 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only415.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only415.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only416 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only416.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only416.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only417 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only417.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only417.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only418 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only418.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only418.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only419 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only419.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only419.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only42 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only42.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only42.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only420 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only420.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only420.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only421 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only421.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only421.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only422 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only422.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only422.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only423 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only423.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only423.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only424 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only424.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only424.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only425 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only425.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only425.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only426 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only426.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only426.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only427 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only427.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only427.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only428 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only428.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only428.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only429 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only429.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only429.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only43 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only43.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only43.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only430 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only430.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only430.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only431 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only431.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only431.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only432 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only432.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only432.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only433 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only433.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only433.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only434 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only434.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only434.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only435 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only435.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only435.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only436 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only436.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only436.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only437 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only437.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only437.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only438 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only438.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only438.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only439 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only439.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only439.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only44 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only44.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only44.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only440 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only440.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only440.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only441 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only441.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only441.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only442 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only442.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only442.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only443 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only443.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only443.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only444 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only444.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only444.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only445 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only445.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only445.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only446 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only446.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only446.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only447 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only447.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only447.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only448 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only448.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only448.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only449 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only449.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only449.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only45 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only45.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only45.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only450 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only450.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only450.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only451 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only451.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only451.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only452 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only452.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only452.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only453 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only453.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only453.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only454 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only454.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only454.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only455 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only455.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only455.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only456 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only456.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only456.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only457 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only457.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only457.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only458 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only458.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only458.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only459 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only459.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only459.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only46 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only46.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only46.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only460 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only460.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only460.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only461 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only461.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only461.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only462 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only462.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only462.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only463 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only463.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only463.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only464 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only464.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only464.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only465 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only465.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only465.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only466 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only466.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only466.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only467 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only467.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only467.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only468 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only468.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only468.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only469 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only469.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only469.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only47 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only47.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only47.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only470 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only470.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only470.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only471 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only471.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only471.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only472 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only472.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only472.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only473 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only473.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only473.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only474 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only474.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only474.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only475 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only475.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only475.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only476 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only476.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only476.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only477 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only477.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only477.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only478 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only478.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only478.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only479 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only479.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only479.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only48 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only48.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only48.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only480 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only480.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only480.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only481 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only481.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only481.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only482 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only482.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only482.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only483 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only483.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only483.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only484 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only484.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only484.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only485 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only485.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only485.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only486 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only486.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only486.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only487 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only487.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only487.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only488 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only488.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only488.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only489 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only489.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only489.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only49 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only49.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only49.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only490 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only490.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only490.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only491 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only491.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only491.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only492 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only492.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only492.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only493 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only493.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only493.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only494 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only494.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only494.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only495 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only495.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only495.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only496 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only496.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only496.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only497 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only497.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only497.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only498 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only498.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only498.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only499 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only499.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only499.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only5 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only5.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only5.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only50 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only50.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only50.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only500 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only500.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only500.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only501 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only501.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only501.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only502 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only502.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only502.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only503 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only503.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only503.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only504 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only504.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only504.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only505 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only505.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only505.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only506 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only506.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only506.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only507 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only507.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only507.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only508 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only508.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only508.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only509 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only509.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only509.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only51 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only51.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only51.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only510 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only510.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only510.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only511 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only511.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only511.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only512 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only512.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only512.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only513 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only513.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only513.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only514 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only514.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only514.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only515 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only515.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only515.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only516 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only516.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only516.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only517 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only517.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only517.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only518 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only518.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only518.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only519 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only519.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only519.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only52 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only52.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only52.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only520 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only520.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only520.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only521 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only521.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only521.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only522 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only522.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only522.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only523 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only523.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only523.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only524 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only524.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only524.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only525 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only525.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only525.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only526 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only526.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only526.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only527 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only527.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only527.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only528 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only528.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only528.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only529 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only529.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only529.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only53 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only53.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only53.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only530 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only530.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only530.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only531 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only531.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only531.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only532 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only532.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only532.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only533 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only533.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only533.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only534 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only534.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only534.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only535 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only535.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only535.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only536 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only536.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only536.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only537 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only537.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only537.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only538 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only538.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only538.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only539 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only539.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only539.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only54 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only54.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only54.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only540 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only540.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only540.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only541 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only541.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only541.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only542 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only542.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only542.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only543 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only543.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only543.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only544 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only544.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only544.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only545 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only545.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only545.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only546 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only546.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only546.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only547 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only547.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only547.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only548 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only548.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only548.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only549 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only549.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only549.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only55 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only55.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only55.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only550 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only550.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only550.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only551 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only551.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only551.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only552 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only552.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only552.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only553 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only553.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only553.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only554 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only554.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only554.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only555 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only555.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only555.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only556 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only556.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only556.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only557 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only557.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only557.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only558 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only558.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only558.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only559 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only559.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only559.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only56 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only56.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only56.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only560 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only560.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only560.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only561 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only561.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only561.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only562 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only562.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only562.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only563 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only563.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only563.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only564 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only564.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only564.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only565 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only565.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only565.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only566 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only566.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only566.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only567 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only567.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only567.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only568 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only568.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only568.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only569 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only569.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only569.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only57 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only57.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only57.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only570 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only570.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only570.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only571 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only571.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only571.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only572 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only572.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only572.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only573 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only573.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only573.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only574 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only574.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only574.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only575 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only575.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only575.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only576 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only576.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only576.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only577 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only577.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only577.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only578 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only578.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only578.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only579 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only579.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only579.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only58 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only58.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only58.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only580 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only580.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only580.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only581 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only581.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only581.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only582 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only582.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only582.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only583 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only583.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only583.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only584 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only584.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only584.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only585 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only585.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only585.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only586 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only586.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only586.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only587 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only587.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only587.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only588 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only588.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only588.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only589 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only589.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only589.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only59 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only59.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only59.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only590 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only590.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only590.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only591 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only591.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only591.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only592 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only592.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only592.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only593 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only593.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only593.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only594 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only594.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only594.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only595 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only595.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only595.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only596 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only596.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only596.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only597 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only597.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only597.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only598 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only598.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only598.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only599 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only599.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only599.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only6 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only6.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only6.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only60 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only60.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only60.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only600 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only600.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only600.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only601 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only601.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only601.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only602 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only602.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only602.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only603 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only603.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only603.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only604 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only604.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only604.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only605 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only605.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only605.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only606 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only606.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only606.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only607 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only607.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only607.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only608 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only608.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only608.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only609 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only609.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only609.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only61 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only61.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only61.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only610 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only610.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only610.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only611 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only611.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only611.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only612 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only612.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only612.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only613 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only613.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only613.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only614 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only614.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only614.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only615 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only615.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only615.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only616 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only616.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only616.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only617 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only617.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only617.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only618 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only618.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only618.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only619 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only619.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only619.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only62 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only62.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only62.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only620 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only620.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only620.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only621 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only621.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only621.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only622 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only622.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only622.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only623 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only623.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only623.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only624 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only624.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only624.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only625 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only625.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only625.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only626 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only626.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only626.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only627 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only627.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only627.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only628 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only628.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only628.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only629 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only629.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only629.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only63 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only63.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only63.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only630 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only630.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only630.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only631 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only631.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only631.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only632 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only632.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only632.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only633 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only633.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only633.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only634 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only634.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only634.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only635 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only635.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only635.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only636 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only636.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only636.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only637 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only637.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only637.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only638 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only638.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only638.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only639 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only639.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only639.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only64 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only64.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only64.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only640 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only640.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only640.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only641 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only641.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only641.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only642 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only642.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only642.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only643 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only643.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only643.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only644 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only644.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only644.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only645 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only645.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only645.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only646 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only646.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only646.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only647 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only647.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only647.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only648 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only648.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only648.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only649 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only649.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only649.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only65 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only65.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only65.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only650 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only650.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only650.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only651 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only651.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only651.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only652 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only652.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only652.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only653 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only653.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only653.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only654 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only654.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only654.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only655 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only655.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only655.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only656 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only656.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only656.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only657 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only657.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only657.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only658 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only658.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only658.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only659 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only659.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only659.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only66 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only66.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only66.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only660 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only660.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only660.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only661 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only661.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only661.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only662 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only662.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only662.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only663 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only663.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only663.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only664 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only664.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only664.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only665 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only665.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only665.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only666 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only666.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only666.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only667 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only667.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only667.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only668 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only668.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only668.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only669 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only669.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only669.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only67 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only67.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only67.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only670 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only670.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only670.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only671 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only671.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only671.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only672 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only672.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only672.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only673 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only673.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only673.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only674 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only674.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only674.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only675 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only675.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only675.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only676 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only676.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only676.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only677 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only677.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only677.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only678 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only678.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only678.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only679 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only679.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only679.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only68 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only68.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only68.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only680 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only680.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only680.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only681 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only681.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only681.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only682 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only682.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only682.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only683 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only683.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only683.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only684 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only684.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only684.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only685 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only685.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only685.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only686 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only686.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only686.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only687 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only687.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only687.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only688 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only688.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only688.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only689 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only689.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only689.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only69 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only69.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only69.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only690 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only690.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only690.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only691 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only691.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only691.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only692 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only692.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only692.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only693 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only693.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only693.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only694 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only694.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only694.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only695 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only695.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only695.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only696 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only696.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only696.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only697 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only697.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only697.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only698 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only698.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only698.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only699 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only699.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only699.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only7 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only7.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only7.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only70 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only70.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only70.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only700 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only700.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only700.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only701 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only701.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only701.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only702 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only702.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only702.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only703 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only703.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only703.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only704 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only704.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only704.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only705 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only705.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only705.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only706 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only706.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only706.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only71 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only71.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only71.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only72 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only72.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only72.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only73 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only73.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only73.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only74 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only74.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only74.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only75 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only75.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only75.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only76 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only76.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only76.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only77 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only77.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only77.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only78 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only78.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only78.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only79 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only79.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only79.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only8 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only8.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only8.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only80 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only80.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only80.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only81 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only81.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only81.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only82 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only82.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only82.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only83 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only83.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only83.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only84 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only84.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only84.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only85 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only85.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only85.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only86 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only86.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only86.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only87 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only87.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only87.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only88 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only88.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only88.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only89 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only89.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only89.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only9 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only9.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only9.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only90 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only90.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only90.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only91 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only91.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only91.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only92 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only92.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only92.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only93 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only93.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only93.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only94 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only94.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only94.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only95 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only95.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only95.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only96 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only96.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only96.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only97 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only97.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only97.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only98 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only98.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only98.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only99 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only99.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-hg19-TET.CG-only99.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G0 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G0.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G0.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G10 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G10.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G10.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1000 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1000.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1000.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1001 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1001.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1001.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1002 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1002.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1002.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1003 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1003.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1003.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1004 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1004.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1004.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1005 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1005.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1005.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1006 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1006.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1006.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1007 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1007.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1007.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1008 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1008.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1008.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1009 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1009.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1009.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1010 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1010.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1010.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1011 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1011.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1011.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1012 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1012.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1012.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1013 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1013.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1013.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1014 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1014.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1014.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1015 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1015.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1015.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1016 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1016.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1016.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1017 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1017.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1017.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1018 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1018.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1018.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1019 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1019.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1019.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1020 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1020.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1020.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1021 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1021.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1021.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1022 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1022.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1022.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1023 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1023.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1023.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1024 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1024.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1024.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1025 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1025.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1025.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1026 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1026.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1026.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1027 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1027.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1027.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1028 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1028.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1028.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1029 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1029.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1029.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1030 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1030.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1030.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1031 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1031.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1031.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1032 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1032.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1032.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1033 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1033.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1033.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1034 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1034.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1034.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1035 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1035.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1035.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1036 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1036.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1036.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1037 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1037.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1037.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1038 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1038.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1038.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1039 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1039.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1039.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1040 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1040.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1040.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1041 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1041.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1041.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1042 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1042.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1042.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1043 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1043.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1043.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1044 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1044.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1044.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1045 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1045.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1045.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1046 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1046.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1046.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1047 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1047.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1047.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1048 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1048.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1048.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1049 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1049.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1049.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1050 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1050.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1050.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1051 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1051.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1051.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1052 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1052.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1052.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1053 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1053.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1053.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1054 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1054.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1054.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1055 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1055.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1055.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1056 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1056.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1056.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1057 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1057.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1057.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1058 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1058.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1058.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1059 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1059.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1059.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1060 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1060.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1060.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1061 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1061.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1061.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1062 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1062.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1062.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1063 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1063.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1063.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1064 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1064.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1064.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1065 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1065.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1065.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1066 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1066.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1066.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1067 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1067.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1067.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1068 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1068.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1068.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1069 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1069.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1069.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1070 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1070.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1070.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1071 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1071.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1071.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1072 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1072.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1072.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1073 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1073.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1073.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1074 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1074.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1074.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1075 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1075.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1075.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1076 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1076.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1076.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1077 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1077.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1077.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1078 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1078.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1078.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1079 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1079.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1079.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1080 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1080.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1080.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1081 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1081.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1081.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1082 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1082.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1082.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1083 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1083.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1083.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1084 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1084.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1084.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1085 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1085.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1085.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1086 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1086.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1086.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1087 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1087.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1087.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1088 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1088.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1088.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1089 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1089.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1089.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1090 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1090.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1090.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1091 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1091.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1091.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1092 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1092.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1092.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1093 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1093.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1093.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1094 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1094.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1094.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1095 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1095.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1095.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1096 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1096.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1096.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1097 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1097.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1097.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1098 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1098.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1098.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1099 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1099.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1099.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G11 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G11.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G11.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G12 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G12.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G12.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1270 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1270.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1270.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1271 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1271.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1271.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1272 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1272.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1272.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1273 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1273.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1273.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1274 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1274.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1274.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1275 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1275.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1275.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1276 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1276.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1276.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1277 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1277.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1277.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1278 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1278.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1278.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1279 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1279.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1279.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1280 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1280.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1280.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1281 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1281.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1281.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1282 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1282.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1282.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1283 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1283.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1283.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1284 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1284.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1284.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1285 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1285.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1285.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1286 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1286.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1286.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1287 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1287.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1287.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1288 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1288.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1288.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1289 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1289.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1289.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1290 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1290.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1290.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1291 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1291.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1291.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1292 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1292.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1292.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1293 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1293.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1293.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1294 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1294.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1294.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1295 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1295.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1295.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1296 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1296.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1296.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1297 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1297.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1297.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1298 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1298.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1298.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1299 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1299.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1299.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G13 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G13.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G13.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1300 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1300.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1300.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1301 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1301.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1301.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1302 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1302.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1302.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1303 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1303.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1303.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1304 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1304.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1304.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1305 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1305.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1305.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1306 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1306.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1306.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1307 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1307.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1307.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1308 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1308.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1308.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1309 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1309.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1309.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1310 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1310.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1310.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1311 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1311.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1311.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1312 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1312.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1312.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1313 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1313.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1313.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1314 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1314.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1314.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1315 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1315.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1315.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1316 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1316.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1316.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1317 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1317.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1317.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1318 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1318.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1318.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1319 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1319.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1319.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1320 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1320.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1320.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1321 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1321.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1321.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1322 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1322.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1322.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1323 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1323.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1323.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1324 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1324.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1324.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1325 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1325.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1325.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1326 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1326.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1326.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1327 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1327.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1327.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1328 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1328.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1328.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1329 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1329.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1329.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1330 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1330.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1330.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1331 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1331.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1331.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1332 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1332.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1332.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1333 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1333.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1333.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1334 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1334.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1334.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1335 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1335.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1335.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1336 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1336.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1336.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1337 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1337.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1337.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1338 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1338.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1338.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1339 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1339.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1339.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1340 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1340.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1340.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1341 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1341.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1341.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1342 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1342.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1342.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1343 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1343.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1343.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1344 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1344.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1344.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1345 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1345.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1345.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1346 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1346.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1346.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1347 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1347.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1347.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1348 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1348.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1348.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1349 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1349.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1349.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1350 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1350.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1350.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1351 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1351.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1351.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1352 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1352.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1352.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1353 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1353.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1353.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1354 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1354.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1354.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1355 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1355.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1355.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1356 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1356.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1356.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1357 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1357.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1357.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1358 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1358.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1358.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1359 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1359.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1359.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1360 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1360.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1360.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1361 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1361.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1361.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1362 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1362.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1362.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1363 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1363.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1363.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1364 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1364.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1364.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1365 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1365.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1365.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1366 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1366.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1366.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1367 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1367.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1367.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1368 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1368.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1368.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1369 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1369.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1369.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1370 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1370.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1370.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1371 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1371.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1371.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1372 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1372.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1372.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1373 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1373.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1373.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1374 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1374.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1374.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1375 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1375.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1375.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1376 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1376.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1376.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1377 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1377.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1377.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1378 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1378.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1378.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1379 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1379.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1379.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1380 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1380.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1380.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1381 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1381.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1381.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1382 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1382.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1382.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1383 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1383.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1383.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1384 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1384.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1384.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1385 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1385.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1385.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1386 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1386.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1386.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1387 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1387.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1387.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1388 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1388.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1388.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1389 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1389.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1389.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1390 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1390.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1390.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1391 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1391.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1391.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1392 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1392.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1392.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1393 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1393.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1393.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1394 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1394.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1394.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1395 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1395.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1395.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1396 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1396.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1396.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1397 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1397.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1397.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1398 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1398.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1398.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1399 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1399.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1399.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G14 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G14.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G14.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1400 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1400.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1400.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1401 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1401.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1401.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1402 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1402.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1402.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1403 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1403.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1403.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1404 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1404.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1404.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1405 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1405.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1405.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1406 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1406.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1406.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1407 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1407.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1407.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1408 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1408.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1408.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1409 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1409.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1409.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1410 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1410.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1410.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1411 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1411.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1411.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1412 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1412.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1412.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1413 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1413.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1413.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1414 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1414.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1414.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1415 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1415.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1415.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1416 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1416.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1416.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1417 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1417.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1417.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1418 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1418.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1418.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1419 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1419.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1419.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1420 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1420.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1420.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1421 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1421.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1421.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1422 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1422.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1422.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1423 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1423.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1423.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1424 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1424.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1424.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1425 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1425.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1425.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1426 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1426.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1426.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1427 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1427.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1427.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1428 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1428.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1428.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1429 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1429.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1429.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1430 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1430.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1430.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1431 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1431.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1431.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1432 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1432.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1432.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1433 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1433.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1433.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1434 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1434.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1434.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1435 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1435.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1435.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1436 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1436.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1436.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1437 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1437.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1437.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1438 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1438.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1438.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1439 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1439.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1439.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1440 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1440.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1440.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1441 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1441.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1441.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1442 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1442.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1442.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1443 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1443.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1443.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1444 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1444.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1444.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1445 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1445.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1445.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1446 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1446.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1446.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1447 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1447.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1447.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1448 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1448.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1448.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1449 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1449.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1449.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1450 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1450.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1450.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1451 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1451.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1451.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1452 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1452.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1452.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1453 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1453.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1453.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1454 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1454.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1454.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1455 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1455.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1455.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1456 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1456.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1456.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1457 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1457.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1457.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1458 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1458.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1458.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1459 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1459.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1459.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1460 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1460.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1460.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1461 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1461.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1461.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1462 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1462.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1462.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1463 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1463.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1463.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1464 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1464.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1464.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1465 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1465.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1465.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1466 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1466.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1466.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1467 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1467.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1467.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1468 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1468.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1468.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1469 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1469.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1469.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1470 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1470.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1470.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1471 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1471.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1471.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1472 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1472.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1472.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1473 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1473.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1473.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1474 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1474.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1474.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1475 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1475.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1475.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1476 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1476.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1476.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1477 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1477.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1477.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1478 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1478.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1478.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1479 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1479.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1479.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1480 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1480.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1480.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1481 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1481.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1481.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1482 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1482.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1482.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1483 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1483.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1483.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1484 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1484.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1484.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1485 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1485.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1485.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1486 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1486.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1486.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1487 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1487.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1487.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1488 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1488.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1488.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1489 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1489.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1489.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1490 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1490.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1490.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1491 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1491.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1491.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1492 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1492.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1492.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1493 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1493.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1493.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1494 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1494.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1494.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1495 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1495.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1495.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1496 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1496.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1496.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1497 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1497.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1497.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1498 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1498.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1498.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1499 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1499.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1499.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G15 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G15.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G15.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1500 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1500.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1500.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1501 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1501.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1501.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1502 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1502.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1502.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1503 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1503.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1503.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1504 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1504.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1504.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1505 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1505.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1505.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1506 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1506.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1506.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1507 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1507.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1507.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1508 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1508.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1508.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1509 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1509.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1509.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1510 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1510.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1510.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1511 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1511.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1511.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1512 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1512.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1512.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1513 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1513.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1513.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1514 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1514.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1514.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1515 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1515.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1515.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1516 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1516.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1516.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1517 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1517.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1517.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1518 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1518.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1518.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1519 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1519.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1519.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1520 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1520.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1520.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1521 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1521.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1521.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1522 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1522.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1522.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1523 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1523.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1523.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1524 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1524.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1524.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1525 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1525.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1525.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1526 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1526.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1526.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1527 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1527.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1527.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1528 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1528.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1528.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1529 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1529.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1529.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1530 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1530.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1530.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1531 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1531.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1531.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1532 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1532.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1532.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1533 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1533.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1533.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1534 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1534.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1534.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1535 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1535.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1535.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1536 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1536.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1536.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1537 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1537.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1537.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1538 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1538.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1538.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1539 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1539.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1539.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1540 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1540.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1540.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1541 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1541.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1541.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1542 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1542.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1542.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1543 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1543.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1543.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1544 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1544.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1544.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1545 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1545.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1545.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1546 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1546.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1546.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1547 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1547.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1547.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1548 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1548.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1548.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1549 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1549.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1549.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1550 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1550.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1550.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1551 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1551.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1551.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1552 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1552.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1552.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1553 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1553.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1553.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1554 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1554.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1554.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1555 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1555.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1555.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1556 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1556.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1556.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1557 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1557.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1557.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1558 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1558.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1558.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1559 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1559.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1559.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1560 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1560.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1560.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1561 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1561.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1561.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1562 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1562.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1562.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1563 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1563.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1563.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1564 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1564.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1564.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1565 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1565.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1565.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1566 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1566.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1566.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1567 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1567.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1567.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1568 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1568.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1568.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1569 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1569.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1569.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1570 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1570.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1570.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1571 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1571.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1571.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1572 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1572.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1572.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1573 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1573.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1573.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1574 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1574.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1574.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1575 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1575.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1575.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1576 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1576.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1576.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1577 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1577.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1577.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1578 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1578.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1578.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1579 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1579.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1579.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1580 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1580.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1580.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1581 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1581.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1581.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1582 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1582.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1582.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1583 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1583.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1583.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1584 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1584.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1584.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1585 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1585.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1585.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1586 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1586.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1586.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1587 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1587.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1587.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1588 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1588.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1588.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1589 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1589.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1589.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1590 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1590.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1590.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1591 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1591.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1591.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1592 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1592.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1592.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1593 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1593.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1593.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1594 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1594.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1594.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1595 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1595.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1595.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1596 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1596.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1596.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1597 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1597.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1597.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1598 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1598.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1598.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1599 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1599.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1599.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G16 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G16.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G16.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1600 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1600.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1600.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1601 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1601.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1601.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1602 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1602.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1602.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1603 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1603.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1603.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1604 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1604.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1604.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1605 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1605.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1605.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1606 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1606.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1606.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1607 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1607.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1607.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1608 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1608.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1608.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1609 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1609.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1609.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1610 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1610.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1610.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1611 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1611.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1611.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1612 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1612.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1612.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1613 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1613.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1613.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1614 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1614.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1614.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1615 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1615.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1615.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1616 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1616.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1616.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1617 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1617.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1617.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1618 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1618.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1618.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1619 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1619.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1619.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1620 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1620.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1620.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1621 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1621.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1621.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1622 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1622.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1622.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1623 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1623.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1623.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1624 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1624.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1624.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1625 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1625.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1625.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1626 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1626.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1626.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1627 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1627.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1627.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1628 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1628.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1628.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1629 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1629.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1629.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1630 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1630.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1630.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1631 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1631.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1631.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1632 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1632.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1632.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1633 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1633.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1633.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1634 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1634.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1634.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1635 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1635.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1635.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1636 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1636.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1636.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1637 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1637.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1637.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1638 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1638.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1638.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1639 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1639.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1639.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1640 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1640.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1640.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1641 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1641.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1641.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1642 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1642.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1642.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1643 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1643.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1643.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1644 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1644.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1644.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1645 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1645.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1645.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1646 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1646.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1646.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1647 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1647.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1647.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1648 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1648.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1648.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1649 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1649.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1649.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1650 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1650.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1650.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1651 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1651.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1651.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1652 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1652.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1652.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1653 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1653.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1653.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1654 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1654.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1654.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1655 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1655.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1655.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1656 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1656.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1656.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1657 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1657.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1657.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1658 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1658.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1658.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1659 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1659.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1659.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1660 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1660.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1660.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1661 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1661.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1661.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1662 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1662.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1662.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1663 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1663.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1663.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1664 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1664.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1664.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1665 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1665.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1665.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1666 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1666.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1666.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1667 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1667.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1667.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1668 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1668.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1668.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1669 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1669.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1669.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1670 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1670.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1670.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1671 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1671.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1671.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1672 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1672.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1672.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1673 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1673.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1673.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1674 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1674.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1674.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1675 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1675.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1675.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1676 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1676.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1676.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1677 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1677.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1677.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1678 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1678.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1678.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1679 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1679.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1679.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1680 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1680.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1680.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1681 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1681.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1681.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1682 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1682.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1682.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1683 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1683.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1683.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1684 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1684.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1684.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1685 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1685.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1685.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1686 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1686.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1686.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1687 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1687.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1687.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1688 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1688.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1688.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1689 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1689.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1689.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1690 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1690.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1690.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1691 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1691.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1691.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1692 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1692.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1692.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1693 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1693.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1693.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1694 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1694.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1694.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1695 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1695.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1695.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1696 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1696.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1696.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1697 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1697.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1697.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1698 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1698.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1698.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1699 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1699.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1699.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G17 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G17.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G17.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1700 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1700.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1700.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1701 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1701.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1701.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1702 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1702.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1702.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1703 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1703.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1703.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1704 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1704.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1704.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1705 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1705.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1705.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1706 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1706.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1706.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1707 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1707.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1707.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1708 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1708.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1708.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1709 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1709.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1709.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1710 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1710.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1710.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1711 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1711.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1711.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1712 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1712.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1712.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1713 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1713.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1713.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1714 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1714.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1714.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1715 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1715.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1715.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1716 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1716.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1716.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1717 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1717.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1717.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1718 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1718.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1718.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1719 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1719.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1719.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1720 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1720.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1720.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1721 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1721.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1721.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1722 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1722.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1722.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1723 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1723.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1723.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1724 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1724.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1724.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1725 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1725.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1725.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1726 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1726.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1726.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1727 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1727.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1727.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1728 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1728.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1728.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1729 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1729.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1729.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1730 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1730.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1730.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1731 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1731.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1731.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1732 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1732.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1732.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1733 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1733.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1733.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1734 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1734.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1734.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1735 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1735.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1735.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1736 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1736.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1736.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1737 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1737.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1737.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1738 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1738.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1738.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1739 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1739.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1739.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1740 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1740.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1740.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1741 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1741.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1741.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1742 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1742.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1742.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1743 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1743.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1743.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1744 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1744.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1744.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1745 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1745.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1745.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1746 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1746.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1746.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1747 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1747.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1747.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1748 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1748.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1748.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1749 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1749.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1749.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1750 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1750.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1750.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1751 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1751.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1751.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1752 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1752.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1752.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1753 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1753.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1753.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1754 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1754.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1754.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1755 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1755.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1755.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1756 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1756.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1756.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1757 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1757.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1757.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1758 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1758.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1758.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1759 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1759.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1759.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1760 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1760.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1760.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1761 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1761.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1761.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1762 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1762.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1762.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1763 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1763.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1763.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1764 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1764.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1764.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1765 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1765.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1765.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1766 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1766.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1766.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1767 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1767.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1767.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1768 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1768.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1768.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1769 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1769.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1769.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1770 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1770.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1770.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1771 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1771.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1771.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1772 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1772.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1772.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1773 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1773.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1773.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1774 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1774.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1774.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1775 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1775.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1775.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1776 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1776.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1776.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1777 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1777.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1777.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1778 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1778.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1778.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1779 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1779.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1779.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1780 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1780.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1780.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1781 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1781.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1781.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1782 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1782.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1782.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1783 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1783.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1783.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1784 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1784.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1784.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1785 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1785.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1785.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1786 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1786.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1786.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1787 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1787.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1787.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1788 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1788.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1788.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1789 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1789.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1789.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1790 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1790.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1790.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1791 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1791.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1791.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1792 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1792.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1792.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1793 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1793.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1793.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1794 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1794.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1794.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1795 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1795.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1795.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1796 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1796.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1796.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1797 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1797.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1797.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1798 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1798.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1798.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1799 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1799.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1799.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G18 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G18.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G18.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1800 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1800.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1800.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1801 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1801.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1801.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1802 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1802.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1802.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1803 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1803.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1803.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1804 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1804.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1804.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1805 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1805.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1805.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1806 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1806.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1806.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1807 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1807.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1807.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1808 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1808.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1808.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1809 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1809.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1809.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1810 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1810.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1810.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1811 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1811.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1811.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1812 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1812.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1812.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1813 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1813.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1813.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1814 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1814.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1814.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1815 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1815.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1815.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1816 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1816.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1816.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1817 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1817.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1817.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1818 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1818.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1818.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1819 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1819.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1819.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1820 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1820.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1820.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1821 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1821.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1821.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1822 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1822.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1822.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1823 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1823.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1823.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1824 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1824.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1824.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1825 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1825.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1825.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1826 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1826.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1826.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1827 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1827.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1827.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1828 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1828.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1828.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1829 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1829.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1829.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1830 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1830.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1830.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1831 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1831.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1831.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1832 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1832.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1832.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1833 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1833.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1833.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1834 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1834.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1834.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1835 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1835.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1835.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1836 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1836.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1836.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1837 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1837.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1837.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1838 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1838.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1838.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1839 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1839.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1839.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1840 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1840.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1840.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1841 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1841.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1841.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1842 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1842.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1842.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1843 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1843.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1843.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1844 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1844.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1844.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1845 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1845.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1845.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1846 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1846.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1846.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1847 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1847.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1847.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1848 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1848.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1848.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1849 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1849.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1849.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1850 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1850.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1850.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1851 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1851.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1851.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1852 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1852.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1852.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1853 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1853.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1853.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1854 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1854.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1854.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1855 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1855.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1855.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1856 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1856.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1856.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1857 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1857.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1857.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1858 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1858.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1858.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1859 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1859.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1859.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1860 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1860.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1860.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1861 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1861.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1861.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1862 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1862.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1862.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1863 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1863.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1863.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1864 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1864.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1864.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1865 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1865.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1865.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1866 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1866.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1866.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1867 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1867.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1867.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1868 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1868.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1868.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1869 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1869.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1869.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1870 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1870.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1870.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1871 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1871.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1871.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1872 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1872.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1872.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1873 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1873.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1873.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1874 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1874.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1874.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1875 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1875.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1875.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1876 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1876.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1876.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1877 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1877.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1877.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1878 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1878.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1878.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1879 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1879.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1879.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1880 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1880.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1880.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1881 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1881.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1881.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1882 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1882.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1882.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1883 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1883.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1883.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1884 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1884.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1884.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1885 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1885.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1885.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1886 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1886.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1886.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1887 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1887.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1887.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1888 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1888.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1888.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1889 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1889.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1889.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1890 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1890.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1890.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1891 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1891.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1891.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1892 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1892.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1892.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1893 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1893.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1893.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1894 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1894.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1894.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1895 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1895.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1895.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1896 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1896.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1896.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1897 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1897.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1897.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1898 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1898.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1898.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1899 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1899.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1899.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G19 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G19.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G19.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1900 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1900.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1900.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1901 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1901.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1901.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1902 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1902.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1902.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1903 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1903.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1903.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1904 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1904.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1904.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1905 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1905.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1905.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1906 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1906.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1906.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1907 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1907.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1907.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1908 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1908.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1908.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1909 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1909.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1909.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1910 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1910.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1910.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1911 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1911.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1911.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1912 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1912.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1912.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1913 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1913.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1913.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1914 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1914.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1914.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1915 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1915.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1915.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1916 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1916.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1916.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1917 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1917.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1917.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1918 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1918.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1918.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1919 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1919.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1919.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1920 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1920.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1920.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1921 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1921.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1921.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1922 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1922.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1922.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1923 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1923.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1923.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1924 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1924.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1924.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1925 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1925.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1925.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1926 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1926.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1926.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1927 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1927.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1927.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1928 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1928.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1928.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1929 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1929.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1929.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1930 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1930.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1930.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1931 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1931.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1931.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1932 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1932.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1932.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1933 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1933.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1933.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1934 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1934.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1934.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1935 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1935.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1935.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1936 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1936.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1936.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1937 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1937.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1937.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1938 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1938.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1938.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1939 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1939.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1939.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1940 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1940.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1940.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1941 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1941.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1941.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1942 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1942.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1942.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1943 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1943.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1943.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1944 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1944.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1944.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1945 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1945.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1945.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1946 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1946.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1946.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1947 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1947.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1947.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1948 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1948.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1948.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1949 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1949.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1949.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1950 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1950.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1950.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1951 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1951.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1951.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1952 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1952.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1952.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1953 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1953.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1953.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1954 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1954.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1954.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1955 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1955.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1955.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1956 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1956.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1956.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1957 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1957.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1957.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1958 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1958.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1958.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1959 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1959.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1959.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1960 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1960.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1960.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1961 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1961.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1961.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1962 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1962.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1962.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1963 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1963.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1963.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1964 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1964.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1964.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1965 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1965.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1965.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1966 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1966.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1966.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1967 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1967.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1967.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1968 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1968.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1968.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1969 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1969.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1969.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1970 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1970.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1970.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1971 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1971.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1971.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1972 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1972.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1972.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1973 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1973.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1973.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1974 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1974.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1974.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1975 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1975.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1975.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1976 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1976.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1976.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1977 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1977.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1977.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1978 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1978.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1978.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1979 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1979.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1979.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1980 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1980.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1980.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1981 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1981.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1981.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1982 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1982.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1982.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1983 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1983.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1983.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1984 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1984.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1984.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1985 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1985.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1985.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1986 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1986.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1986.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1987 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1987.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1987.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1988 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1988.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1988.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1989 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1989.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1989.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1990 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1990.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1990.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1991 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1991.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1991.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1992 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1992.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1992.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1993 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1993.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1993.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1994 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1994.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1994.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1995 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1995.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1995.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1996 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1996.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1996.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1997 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1997.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1997.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1998 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1998.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1998.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1999 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1999.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G1999.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G20 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G20.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G20.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2000 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2000.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2000.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2001 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2001.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2001.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2002 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2002.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2002.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2003 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2003.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2003.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2004 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2004.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2004.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2005 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2005.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2005.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2006 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2006.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2006.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2007 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2007.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2007.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2008 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2008.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2008.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2009 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2009.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2009.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2010 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2010.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2010.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2011 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2011.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2011.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2012 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2012.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2012.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2013 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2013.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2013.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2014 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2014.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2014.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2015 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2015.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2015.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2016 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2016.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2016.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2017 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2017.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2017.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2018 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2018.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2018.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2019 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2019.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2019.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2020 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2020.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2020.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2021 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2021.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2021.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2022 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2022.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2022.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2023 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2023.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2023.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2024 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2024.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2024.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2025 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2025.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2025.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2026 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2026.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2026.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2027 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2027.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2027.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2028 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2028.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2028.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2029 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2029.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2029.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2030 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2030.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2030.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2031 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2031.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2031.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2032 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2032.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2032.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2033 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2033.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2033.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2034 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2034.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2034.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2035 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2035.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2035.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2036 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2036.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2036.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2037 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2037.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2037.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2038 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2038.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2038.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2039 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2039.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2039.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2040 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2040.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2040.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2041 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2041.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2041.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2042 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2042.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2042.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2043 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2043.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2043.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2044 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2044.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2044.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2045 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2045.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2045.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2046 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2046.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2046.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2047 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2047.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2047.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2048 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2048.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2048.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2049 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2049.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2049.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2050 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2050.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2050.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2051 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2051.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2051.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2052 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2052.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2052.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2053 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2053.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2053.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2054 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2054.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2054.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2055 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2055.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2055.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2056 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2056.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2056.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2057 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2057.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2057.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2058 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2058.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2058.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2059 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2059.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2059.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2060 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2060.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2060.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2061 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2061.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2061.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2062 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2062.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2062.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2063 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2063.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2063.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2064 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2064.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2064.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2065 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2065.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2065.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2066 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2066.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2066.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2067 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2067.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2067.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2068 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2068.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2068.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2069 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2069.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2069.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2070 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2070.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2070.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2071 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2071.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2071.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2072 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2072.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2072.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2073 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2073.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2073.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2074 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2074.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2074.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2075 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2075.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2075.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2076 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2076.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2076.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2077 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2077.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2077.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2078 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2078.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2078.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2079 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2079.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2079.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2080 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2080.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2080.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2081 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2081.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2081.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2082 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2082.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2082.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2083 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2083.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2083.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2084 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2084.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2084.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2085 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2085.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2085.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2086 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2086.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2086.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2087 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2087.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2087.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2088 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2088.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2088.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2089 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2089.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2089.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2090 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2090.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2090.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2091 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2091.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2091.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2092 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2092.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2092.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2093 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2093.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2093.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2094 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2094.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2094.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2095 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2095.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2095.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2096 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2096.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2096.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2097 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2097.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2097.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2098 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2098.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2098.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2099 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2099.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2099.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G21 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G21.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G21.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G22 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G22.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G22.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2270 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2270.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2270.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2271 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2271.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2271.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2272 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2272.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2272.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2273 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2273.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2273.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2274 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2274.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2274.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2275 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2275.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2275.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2276 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2276.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2276.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2277 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2277.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2277.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2278 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2278.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2278.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2279 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2279.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2279.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2280 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2280.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2280.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2281 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2281.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2281.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2282 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2282.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2282.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2283 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2283.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2283.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2284 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2284.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2284.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2285 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2285.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2285.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2286 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2286.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2286.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2287 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2287.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2287.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2288 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2288.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2288.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2289 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2289.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2289.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2290 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2290.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2290.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2291 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2291.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2291.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2292 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2292.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2292.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2293 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2293.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2293.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2294 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2294.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2294.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2295 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2295.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2295.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2296 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2296.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2296.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2297 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2297.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2297.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2298 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2298.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2298.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2299 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2299.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2299.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G23 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G23.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G23.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2300 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2300.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2300.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2301 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2301.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2301.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2302 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2302.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2302.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2303 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2303.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2303.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2304 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2304.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2304.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2305 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2305.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2305.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2306 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2306.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2306.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2307 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2307.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2307.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2308 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2308.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2308.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2309 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2309.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2309.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2310 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2310.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2310.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2311 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2311.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2311.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2312 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2312.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2312.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2313 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2313.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2313.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2314 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2314.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2314.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2315 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2315.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2315.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2316 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2316.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2316.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2317 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2317.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2317.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2318 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2318.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2318.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2319 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2319.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2319.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2320 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2320.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2320.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2321 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2321.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2321.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2322 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2322.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2322.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2323 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2323.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2323.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2324 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2324.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2324.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2325 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2325.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2325.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2326 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2326.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2326.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2327 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2327.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2327.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2328 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2328.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2328.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2329 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2329.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2329.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2330 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2330.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2330.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2331 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2331.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2331.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2332 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2332.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2332.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2333 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2333.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2333.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2334 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2334.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2334.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2335 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2335.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2335.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2336 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2336.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2336.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2337 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2337.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2337.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2338 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2338.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2338.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2339 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2339.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2339.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2340 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2340.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2340.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2341 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2341.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2341.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2342 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2342.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2342.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2343 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2343.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2343.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2344 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2344.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2344.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2345 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2345.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2345.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2346 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2346.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2346.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2347 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2347.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2347.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2348 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2348.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2348.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2349 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2349.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2349.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2350 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2350.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2350.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2351 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2351.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2351.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2352 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2352.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2352.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2353 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2353.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2353.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2354 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2354.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2354.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2355 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2355.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2355.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2356 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2356.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2356.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2357 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2357.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2357.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2358 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2358.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2358.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2359 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2359.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2359.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2360 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2360.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2360.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2361 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2361.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2361.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2362 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2362.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2362.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2363 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2363.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2363.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2364 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2364.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2364.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2365 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2365.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2365.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2366 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2366.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2366.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2367 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2367.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2367.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2368 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2368.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2368.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2369 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2369.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2369.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2370 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2370.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2370.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2371 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2371.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2371.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2372 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2372.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2372.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2373 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2373.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2373.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2374 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2374.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2374.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2375 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2375.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2375.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2376 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2376.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2376.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2377 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2377.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2377.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2378 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2378.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2378.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2379 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2379.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2379.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2380 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2380.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2380.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2381 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2381.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2381.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2382 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2382.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2382.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2383 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2383.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2383.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2384 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2384.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2384.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2385 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2385.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2385.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2386 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2386.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2386.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2387 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2387.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2387.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2388 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2388.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2388.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2389 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2389.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2389.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2390 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2390.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2390.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2391 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2391.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2391.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2392 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2392.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2392.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2393 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2393.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2393.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2394 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2394.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2394.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2395 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2395.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2395.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2396 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2396.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2396.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2397 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2397.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2397.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2398 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2398.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2398.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2399 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2399.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2399.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G24 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G24.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G24.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2400 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2400.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2400.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2401 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2401.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2401.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2402 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2402.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2402.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2403 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2403.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2403.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2404 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2404.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2404.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2405 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2405.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2405.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2406 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2406.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2406.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2407 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2407.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2407.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2408 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2408.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2408.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2409 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2409.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2409.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2410 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2410.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2410.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2411 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2411.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2411.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2412 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2412.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2412.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2413 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2413.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2413.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2414 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2414.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2414.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2415 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2415.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2415.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2416 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2416.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2416.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2417 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2417.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2417.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2418 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2418.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2418.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2419 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2419.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2419.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2420 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2420.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2420.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2421 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2421.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2421.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2422 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2422.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2422.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2423 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2423.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2423.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2424 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2424.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2424.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2425 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2425.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2425.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2426 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2426.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2426.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2427 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2427.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2427.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2428 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2428.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2428.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2429 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2429.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2429.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2430 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2430.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2430.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2431 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2431.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2431.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2432 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2432.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2432.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2433 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2433.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2433.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2434 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2434.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2434.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2435 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2435.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2435.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2436 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2436.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2436.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2437 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2437.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2437.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2438 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2438.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2438.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2439 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2439.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2439.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2440 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2440.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2440.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2441 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2441.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2441.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2442 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2442.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2442.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2443 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2443.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2443.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2444 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2444.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2444.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2445 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2445.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2445.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2446 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2446.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2446.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2447 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2447.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2447.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2448 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2448.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2448.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2449 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2449.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2449.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2450 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2450.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2450.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2451 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2451.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2451.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2452 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2452.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2452.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2453 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2453.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2453.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2454 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2454.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2454.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2455 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2455.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2455.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2456 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2456.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2456.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2457 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2457.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2457.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2458 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2458.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2458.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2459 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2459.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2459.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2460 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2460.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2460.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2461 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2461.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2461.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2462 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2462.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2462.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2463 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2463.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2463.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2464 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2464.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2464.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2465 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2465.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2465.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2466 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2466.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2466.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2467 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2467.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2467.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2468 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2468.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2468.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2469 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2469.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2469.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2470 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2470.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2470.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2471 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2471.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2471.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2472 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2472.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2472.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2473 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2473.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2473.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2474 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2474.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2474.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2475 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2475.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2475.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2476 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2476.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2476.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2477 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2477.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2477.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2478 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2478.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2478.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2479 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2479.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2479.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2480 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2480.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2480.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2481 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2481.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2481.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2482 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2482.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2482.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2483 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2483.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2483.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2484 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2484.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2484.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2485 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2485.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2485.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2486 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2486.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2486.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2487 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2487.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2487.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2488 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2488.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2488.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2489 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2489.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2489.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2490 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2490.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2490.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2491 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2491.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2491.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2492 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2492.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2492.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2493 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2493.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2493.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2494 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2494.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2494.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2495 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2495.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2495.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2496 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2496.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2496.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2497 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2497.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2497.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2498 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2498.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2498.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2499 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2499.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2499.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G25 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G25.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G25.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2500 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2500.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2500.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2501 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2501.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2501.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2502 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2502.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2502.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2503 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2503.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2503.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2504 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2504.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2504.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2505 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2505.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2505.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2506 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2506.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2506.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2507 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2507.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2507.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2508 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2508.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2508.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2509 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2509.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2509.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2510 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2510.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2510.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2511 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2511.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2511.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2512 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2512.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2512.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2513 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2513.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2513.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2514 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2514.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2514.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2515 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2515.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2515.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2516 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2516.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2516.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2517 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2517.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2517.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2518 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2518.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2518.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2519 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2519.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2519.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2520 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2520.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2520.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2521 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2521.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2521.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2522 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2522.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2522.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2523 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2523.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2523.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2524 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2524.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2524.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2525 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2525.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2525.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2526 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2526.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2526.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2527 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2527.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2527.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2528 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2528.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2528.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2529 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2529.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2529.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2530 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2530.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2530.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2531 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2531.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2531.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2532 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2532.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2532.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2533 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2533.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2533.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2534 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2534.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2534.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2535 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2535.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2535.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2536 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2536.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2536.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2537 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2537.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2537.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2538 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2538.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2538.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2539 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2539.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2539.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2540 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2540.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2540.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2541 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2541.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2541.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2542 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2542.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2542.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2543 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2543.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2543.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2544 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2544.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2544.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2545 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2545.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2545.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2546 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2546.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2546.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2547 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2547.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2547.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2548 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2548.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2548.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2549 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2549.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2549.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2550 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2550.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2550.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2551 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2551.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2551.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2552 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2552.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2552.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2553 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2553.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2553.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2554 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2554.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2554.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2555 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2555.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2555.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2556 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2556.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2556.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2557 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2557.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2557.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2558 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2558.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2558.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2559 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2559.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2559.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2560 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2560.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2560.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2561 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2561.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2561.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2562 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2562.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2562.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2563 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2563.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2563.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2564 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2564.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2564.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2565 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2565.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2565.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2566 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2566.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2566.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2567 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2567.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2567.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2568 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2568.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2568.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2569 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2569.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2569.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2570 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2570.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2570.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2571 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2571.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2571.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2572 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2572.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2572.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2573 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2573.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2573.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2574 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2574.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2574.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2575 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2575.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2575.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2576 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2576.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2576.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2577 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2577.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2577.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2578 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2578.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2578.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2579 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2579.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2579.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2580 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2580.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2580.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2581 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2581.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2581.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2582 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2582.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2582.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2583 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2583.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2583.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2584 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2584.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2584.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2585 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2585.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2585.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2586 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2586.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2586.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2587 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2587.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2587.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2588 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2588.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2588.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2589 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2589.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2589.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2590 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2590.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2590.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2591 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2591.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2591.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2592 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2592.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2592.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2593 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2593.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2593.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2594 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2594.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2594.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2595 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2595.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2595.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2596 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2596.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2596.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2597 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2597.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2597.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2598 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2598.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2598.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2599 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2599.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2599.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G26 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G26.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G26.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2600 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2600.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2600.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2601 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2601.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2601.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2602 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2602.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2602.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2603 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2603.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2603.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2604 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2604.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2604.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2605 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2605.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2605.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2606 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2606.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2606.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2607 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2607.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2607.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2608 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2608.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2608.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2609 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2609.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2609.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2610 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2610.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2610.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2611 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2611.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2611.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2612 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2612.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2612.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2613 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2613.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2613.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2614 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2614.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2614.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2615 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2615.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2615.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2616 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2616.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2616.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2617 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2617.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2617.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2618 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2618.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2618.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2619 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2619.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2619.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2620 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2620.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2620.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2621 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2621.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2621.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2622 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2622.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2622.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2623 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2623.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2623.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2624 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2624.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2624.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2625 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2625.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2625.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2626 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2626.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2626.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2627 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2627.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2627.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2628 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2628.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2628.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2629 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2629.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2629.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2630 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2630.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2630.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2631 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2631.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2631.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2632 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2632.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2632.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2633 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2633.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2633.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2634 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2634.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2634.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2635 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2635.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2635.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2636 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2636.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2636.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2637 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2637.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2637.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2638 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2638.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2638.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2639 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2639.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2639.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2640 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2640.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2640.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2641 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2641.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2641.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2642 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2642.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2642.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2643 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2643.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2643.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2644 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2644.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2644.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2645 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2645.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2645.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2646 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2646.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2646.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2647 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2647.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2647.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2648 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2648.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2648.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2649 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2649.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2649.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2650 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2650.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2650.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2651 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2651.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2651.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2652 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2652.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2652.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2653 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2653.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2653.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2654 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2654.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2654.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2655 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2655.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2655.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2656 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2656.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2656.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2657 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2657.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2657.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2658 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2658.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2658.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2659 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2659.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2659.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2660 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2660.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2660.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2661 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2661.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2661.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2662 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2662.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2662.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2663 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2663.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2663.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2664 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2664.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2664.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2665 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2665.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2665.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2666 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2666.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2666.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2667 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2667.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2667.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2668 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2668.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2668.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2669 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2669.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2669.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2670 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2670.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2670.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2671 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2671.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2671.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2672 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2672.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2672.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2673 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2673.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2673.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2674 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2674.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2674.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2675 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2675.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2675.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2676 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2676.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2676.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2677 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2677.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2677.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2678 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2678.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2678.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2679 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2679.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2679.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2680 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2680.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2680.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2681 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2681.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2681.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2682 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2682.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2682.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2683 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2683.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2683.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2684 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2684.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2684.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2685 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2685.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2685.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2686 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2686.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2686.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2687 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2687.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2687.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2688 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2688.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2688.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2689 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2689.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2689.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2690 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2690.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2690.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2691 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2691.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2691.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2692 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2692.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2692.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2693 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2693.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2693.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2694 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2694.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2694.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2695 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2695.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2695.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2696 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2696.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2696.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2697 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2697.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2697.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2698 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2698.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2698.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2699 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2699.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2699.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G27 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G27.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G27.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G270 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G270.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G270.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2700 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2700.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2700.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2701 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2701.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2701.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2702 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2702.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2702.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2703 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2703.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2703.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2704 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2704.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2704.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2705 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2705.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2705.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2706 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2706.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2706.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2707 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2707.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2707.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2708 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2708.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2708.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2709 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2709.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2709.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G271 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G271.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G271.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2710 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2710.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2710.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2711 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2711.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2711.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2712 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2712.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2712.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2713 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2713.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2713.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2714 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2714.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2714.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2715 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2715.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2715.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2716 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2716.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2716.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2717 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2717.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2717.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2718 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2718.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2718.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2719 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2719.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2719.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G272 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G272.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G272.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2720 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2720.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2720.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2721 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2721.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2721.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2722 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2722.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2722.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2723 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2723.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2723.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2724 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2724.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2724.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2725 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2725.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2725.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2726 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2726.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2726.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2727 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2727.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2727.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2728 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2728.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2728.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2729 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2729.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2729.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G273 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G273.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G273.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2730 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2730.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2730.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2731 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2731.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2731.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2732 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2732.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2732.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2733 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2733.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2733.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2734 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2734.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2734.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2735 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2735.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2735.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2736 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2736.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2736.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2737 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2737.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2737.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2738 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2738.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2738.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2739 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2739.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2739.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G274 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G274.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G274.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2740 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2740.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2740.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2741 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2741.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2741.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2742 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2742.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2742.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2743 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2743.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2743.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2744 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2744.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2744.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2745 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2745.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2745.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2746 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2746.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2746.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2747 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2747.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2747.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2748 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2748.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2748.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2749 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2749.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2749.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G275 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G275.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G275.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2750 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2750.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2750.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2751 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2751.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2751.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2752 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2752.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2752.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2753 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2753.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2753.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2754 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2754.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2754.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2755 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2755.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2755.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2756 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2756.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2756.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2757 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2757.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2757.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2758 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2758.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2758.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2759 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2759.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2759.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G276 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G276.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G276.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2760 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2760.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2760.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2761 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2761.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2761.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2762 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2762.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2762.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2763 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2763.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2763.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2764 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2764.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2764.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2765 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2765.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2765.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2766 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2766.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2766.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2767 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2767.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2767.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2768 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2768.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2768.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2769 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2769.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2769.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G277 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G277.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G277.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2770 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2770.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2770.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2771 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2771.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2771.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2772 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2772.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2772.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2773 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2773.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2773.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2774 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2774.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2774.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2775 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2775.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2775.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2776 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2776.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2776.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2777 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2777.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2777.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2778 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2778.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2778.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2779 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2779.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2779.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G278 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G278.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G278.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2780 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2780.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2780.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2781 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2781.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2781.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2782 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2782.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2782.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2783 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2783.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2783.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2784 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2784.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2784.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2785 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2785.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2785.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2786 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2786.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2786.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2787 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2787.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2787.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2788 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2788.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2788.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2789 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2789.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2789.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G279 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G279.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G279.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2790 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2790.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2790.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2791 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2791.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2791.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2792 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2792.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2792.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2793 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2793.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2793.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2794 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2794.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2794.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2795 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2795.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2795.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2796 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2796.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2796.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2797 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2797.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2797.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2798 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2798.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2798.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2799 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2799.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2799.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G28 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G28.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G28.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G280 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G280.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G280.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2800 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2800.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2800.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2801 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2801.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2801.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2802 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2802.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2802.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2803 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2803.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2803.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2804 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2804.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2804.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2805 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2805.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2805.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2806 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2806.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2806.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2807 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2807.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2807.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2808 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2808.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2808.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2809 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2809.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2809.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G281 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G281.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G281.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2810 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2810.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2810.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2811 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2811.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2811.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2812 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2812.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2812.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2813 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2813.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2813.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2814 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2814.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2814.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2815 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2815.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2815.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2816 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2816.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2816.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2817 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2817.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2817.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2818 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2818.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2818.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2819 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2819.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2819.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G282 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G282.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G282.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2820 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2820.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2820.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2821 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2821.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2821.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2822 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2822.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2822.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2823 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2823.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2823.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2824 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2824.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2824.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2825 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2825.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2825.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2826 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2826.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2826.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2827 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2827.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2827.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2828 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2828.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2828.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2829 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2829.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2829.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G283 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G283.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G283.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2830 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2830.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2830.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2831 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2831.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2831.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2832 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2832.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2832.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2833 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2833.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2833.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2834 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2834.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2834.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2835 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2835.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2835.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2836 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2836.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2836.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2837 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2837.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2837.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2838 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2838.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2838.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2839 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2839.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2839.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G284 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G284.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G284.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2840 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2840.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2840.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2841 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2841.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2841.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2842 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2842.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2842.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2843 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2843.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2843.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2844 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2844.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2844.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2845 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2845.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2845.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2846 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2846.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2846.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2847 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2847.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2847.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2848 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2848.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2848.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2849 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2849.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2849.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G285 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G285.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G285.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2850 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2850.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2850.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2851 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2851.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2851.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2852 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2852.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2852.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2853 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2853.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2853.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2854 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2854.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2854.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2855 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2855.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2855.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2856 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2856.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2856.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2857 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2857.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2857.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2858 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2858.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2858.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2859 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2859.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2859.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G286 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G286.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G286.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2860 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2860.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2860.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2861 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2861.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2861.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2862 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2862.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2862.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2863 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2863.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2863.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2864 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2864.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2864.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2865 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2865.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2865.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2866 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2866.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2866.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2867 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2867.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2867.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2868 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2868.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2868.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2869 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2869.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2869.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G287 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G287.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G287.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2870 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2870.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2870.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2871 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2871.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2871.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2872 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2872.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2872.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2873 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2873.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2873.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2874 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2874.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2874.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2875 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2875.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2875.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2876 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2876.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2876.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2877 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2877.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2877.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2878 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2878.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2878.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2879 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2879.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2879.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G288 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G288.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G288.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2880 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2880.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2880.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2881 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2881.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2881.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2882 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2882.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2882.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2883 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2883.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2883.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2884 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2884.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2884.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2885 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2885.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2885.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2886 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2886.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2886.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2887 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2887.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2887.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2888 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2888.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2888.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2889 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2889.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2889.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G289 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G289.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G289.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2890 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2890.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2890.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2891 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2891.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2891.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2892 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2892.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2892.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2893 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2893.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2893.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2894 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2894.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2894.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2895 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2895.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2895.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2896 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2896.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2896.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2897 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2897.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2897.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2898 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2898.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2898.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2899 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2899.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2899.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G29 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G29.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G29.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G290 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G290.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G290.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2900 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2900.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2900.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2901 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2901.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2901.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2902 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2902.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2902.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2903 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2903.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2903.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2904 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2904.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2904.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2905 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2905.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2905.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2906 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2906.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2906.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2907 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2907.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2907.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2908 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2908.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2908.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2909 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2909.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2909.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G291 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G291.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G291.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2910 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2910.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2910.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2911 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2911.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2911.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2912 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2912.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2912.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2913 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2913.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2913.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2914 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2914.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2914.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2915 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2915.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2915.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2916 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2916.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2916.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2917 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2917.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2917.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2918 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2918.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2918.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2919 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2919.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2919.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G292 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G292.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G292.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2920 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2920.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2920.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2921 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2921.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2921.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2922 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2922.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2922.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2923 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2923.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2923.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2924 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2924.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2924.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2925 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2925.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2925.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2926 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2926.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2926.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2927 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2927.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2927.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2928 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2928.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2928.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2929 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2929.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2929.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G293 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G293.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G293.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2930 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2930.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2930.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2931 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2931.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2931.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2932 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2932.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2932.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2933 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2933.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2933.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2934 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2934.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2934.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2935 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2935.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2935.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2936 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2936.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2936.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2937 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2937.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2937.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2938 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2938.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2938.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2939 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2939.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2939.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G294 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G294.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G294.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2940 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2940.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2940.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2941 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2941.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2941.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2942 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2942.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2942.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2943 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2943.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2943.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2944 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2944.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2944.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2945 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2945.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2945.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2946 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2946.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2946.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2947 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2947.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2947.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2948 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2948.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2948.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2949 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2949.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2949.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G295 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G295.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G295.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2950 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2950.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2950.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2951 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2951.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2951.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2952 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2952.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2952.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2953 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2953.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2953.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2954 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2954.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2954.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2955 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2955.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2955.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2956 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2956.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2956.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2957 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2957.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2957.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2958 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2958.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2958.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2959 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2959.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2959.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G296 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G296.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G296.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2960 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2960.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2960.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2961 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2961.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2961.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2962 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2962.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2962.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2963 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2963.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2963.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2964 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2964.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2964.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2965 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2965.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2965.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2966 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2966.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2966.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2967 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2967.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2967.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2968 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2968.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2968.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2969 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2969.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2969.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G297 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G297.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G297.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2970 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2970.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2970.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2971 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2971.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2971.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2972 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2972.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2972.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2973 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2973.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2973.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2974 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2974.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2974.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2975 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2975.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2975.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2976 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2976.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2976.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2977 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2977.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2977.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2978 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2978.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2978.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2979 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2979.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2979.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G298 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G298.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G298.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2980 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2980.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2980.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2981 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2981.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2981.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2982 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2982.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2982.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2983 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2983.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2983.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2984 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2984.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2984.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2985 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2985.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2985.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2986 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2986.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2986.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2987 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2987.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2987.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2988 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2988.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2988.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2989 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2989.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2989.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G299 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G299.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G299.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2990 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2990.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2990.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2991 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2991.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2991.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2992 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2992.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2992.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2993 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2993.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2993.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2994 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2994.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2994.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2995 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2995.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2995.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2996 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2996.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2996.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2997 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2997.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2997.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2998 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2998.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2998.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2999 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2999.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G2999.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G30 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G30.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G30.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G300 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G300.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G300.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3000 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3000.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3000.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3001 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3001.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3001.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3002 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3002.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3002.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3003 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3003.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3003.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3004 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3004.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3004.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3005 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3005.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3005.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3006 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3006.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3006.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3007 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3007.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3007.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3008 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3008.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3008.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3009 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3009.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3009.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G301 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G301.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G301.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3010 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3010.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3010.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3011 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3011.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3011.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3012 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3012.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3012.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3013 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3013.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3013.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3014 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3014.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3014.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3015 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3015.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3015.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3016 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3016.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3016.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3017 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3017.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3017.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3018 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3018.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3018.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3019 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3019.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3019.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G302 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G302.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G302.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3020 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3020.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3020.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3021 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3021.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3021.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3022 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3022.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3022.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3023 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3023.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3023.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3024 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3024.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3024.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3025 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3025.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3025.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3026 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3026.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3026.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3027 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3027.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3027.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3028 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3028.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3028.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3029 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3029.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3029.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G303 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G303.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G303.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3030 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3030.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3030.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3031 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3031.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3031.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3032 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3032.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3032.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3033 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3033.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3033.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3034 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3034.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3034.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3035 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3035.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3035.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3036 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3036.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3036.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3037 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3037.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3037.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3038 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3038.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3038.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3039 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3039.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3039.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G304 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G304.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G304.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3040 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3040.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3040.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3041 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3041.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3041.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3042 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3042.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3042.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3043 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3043.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3043.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3044 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3044.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3044.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3045 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3045.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3045.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3046 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3046.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3046.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3047 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3047.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3047.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3048 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3048.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3048.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3049 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3049.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3049.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G305 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G305.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G305.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3050 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3050.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3050.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3051 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3051.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3051.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3052 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3052.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3052.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3053 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3053.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3053.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3054 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3054.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3054.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3055 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3055.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3055.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3056 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3056.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3056.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3057 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3057.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3057.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3058 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3058.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3058.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3059 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3059.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3059.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G306 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G306.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G306.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3060 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3060.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3060.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3061 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3061.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3061.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3062 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3062.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3062.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3063 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3063.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3063.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3064 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3064.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3064.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3065 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3065.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3065.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3066 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3066.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3066.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3067 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3067.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3067.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3068 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3068.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3068.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3069 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3069.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3069.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G307 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G307.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G307.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3070 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3070.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3070.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3071 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3071.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3071.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3072 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3072.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3072.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3073 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3073.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3073.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3074 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3074.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3074.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3075 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3075.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3075.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3076 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3076.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3076.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3077 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3077.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3077.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3078 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3078.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3078.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3079 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3079.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3079.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G308 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G308.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G308.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3080 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3080.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3080.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3081 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3081.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3081.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3082 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3082.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3082.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3083 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3083.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3083.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3084 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3084.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3084.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3085 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3085.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3085.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3086 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3086.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3086.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3087 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3087.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3087.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3088 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3088.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3088.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3089 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3089.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3089.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G309 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G309.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G309.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3090 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3090.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3090.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3091 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3091.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3091.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3092 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3092.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3092.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3093 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3093.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3093.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3094 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3094.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3094.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3095 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3095.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3095.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3096 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3096.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3096.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3097 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3097.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3097.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3098 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3098.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3098.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3099 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3099.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3099.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G31 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G31.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G31.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G310 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G310.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G310.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G311 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G311.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G311.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G312 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G312.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G312.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G313 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G313.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G313.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G314 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G314.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G314.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G315 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G315.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G315.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G316 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G316.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G316.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G317 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G317.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G317.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G318 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G318.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G318.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G319 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G319.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G319.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G32 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G32.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G32.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G320 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G320.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G320.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G321 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G321.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G321.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G322 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G322.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G322.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G323 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G323.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G323.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G324 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G324.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G324.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G325 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G325.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G325.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G326 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G326.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G326.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G327 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G327.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G327.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3270 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3270.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3270.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3271 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3271.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3271.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3272 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3272.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3272.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3273 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3273.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3273.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3274 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3274.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3274.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3275 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3275.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3275.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3276 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3276.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3276.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3277 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3277.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3277.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3278 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3278.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3278.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3279 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3279.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3279.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G328 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G328.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G328.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3280 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3280.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3280.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3281 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3281.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3281.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3282 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3282.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3282.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3283 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3283.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3283.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3284 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3284.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3284.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3285 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3285.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3285.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3286 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3286.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3286.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3287 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3287.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3287.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3288 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3288.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3288.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3289 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3289.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3289.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G329 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G329.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G329.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3290 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3290.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3290.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3291 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3291.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3291.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3292 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3292.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3292.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3293 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3293.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3293.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3294 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3294.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3294.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3295 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3295.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3295.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3296 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3296.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3296.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3297 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3297.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3297.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3298 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3298.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3298.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3299 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3299.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3299.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G33 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G33.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G33.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G330 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G330.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G330.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3300 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3300.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3300.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3301 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3301.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3301.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3302 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3302.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3302.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3303 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3303.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3303.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3304 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3304.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3304.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3305 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3305.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3305.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3306 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3306.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3306.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3307 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3307.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3307.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3308 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3308.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3308.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3309 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3309.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3309.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G331 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G331.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G331.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3310 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3310.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3310.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3311 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3311.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3311.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3312 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3312.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3312.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3313 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3313.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3313.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3314 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3314.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3314.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3315 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3315.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3315.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3316 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3316.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3316.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3317 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3317.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3317.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3318 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3318.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3318.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3319 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3319.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3319.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G332 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G332.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G332.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3320 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3320.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3320.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3321 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3321.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3321.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3322 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3322.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3322.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3323 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3323.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3323.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3324 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3324.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3324.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3325 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3325.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3325.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3326 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3326.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3326.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3327 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3327.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3327.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3328 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3328.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3328.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3329 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3329.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3329.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G333 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G333.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G333.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3330 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3330.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3330.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3331 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3331.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3331.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3332 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3332.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3332.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3333 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3333.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3333.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3334 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3334.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3334.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3335 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3335.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3335.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3336 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3336.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3336.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3337 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3337.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3337.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3338 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3338.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3338.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3339 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3339.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3339.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G334 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G334.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G334.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3340 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3340.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3340.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3341 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3341.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3341.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3342 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3342.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3342.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3343 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3343.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3343.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3344 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3344.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3344.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3345 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3345.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3345.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3346 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3346.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3346.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3347 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3347.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3347.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3348 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3348.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3348.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3349 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3349.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3349.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G335 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G335.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G335.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3350 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3350.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3350.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3351 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3351.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3351.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3352 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3352.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3352.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3353 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3353.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3353.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3354 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3354.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3354.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3355 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3355.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3355.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3356 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3356.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3356.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3357 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3357.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3357.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3358 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3358.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3358.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3359 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3359.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3359.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G336 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G336.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G336.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3360 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3360.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3360.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3361 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3361.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3361.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3362 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3362.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3362.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3363 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3363.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3363.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3364 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3364.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3364.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3365 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3365.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3365.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3366 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3366.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3366.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3367 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3367.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3367.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3368 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3368.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3368.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3369 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3369.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3369.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G337 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G337.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G337.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3370 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3370.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3370.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3371 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3371.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3371.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3372 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3372.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3372.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3373 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3373.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3373.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3374 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3374.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3374.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3375 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3375.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3375.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3376 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3376.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3376.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3377 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3377.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3377.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3378 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3378.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3378.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3379 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3379.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3379.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G338 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G338.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G338.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3380 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3380.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3380.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3381 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3381.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3381.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3382 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3382.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3382.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3383 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3383.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3383.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3384 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3384.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3384.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3385 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3385.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3385.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3386 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3386.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3386.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3387 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3387.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3387.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3388 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3388.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3388.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3389 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3389.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3389.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G339 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G339.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G339.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3390 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3390.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3390.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3391 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3391.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3391.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3392 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3392.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3392.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3393 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3393.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3393.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3394 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3394.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3394.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3395 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3395.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3395.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3396 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3396.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3396.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3397 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3397.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3397.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3398 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3398.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3398.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3399 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3399.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3399.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G34 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G34.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G34.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G340 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G340.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G340.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3400 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3400.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3400.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3401 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3401.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3401.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3402 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3402.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3402.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3403 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3403.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3403.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3404 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3404.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3404.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3405 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3405.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3405.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3406 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3406.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3406.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3407 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3407.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3407.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3408 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3408.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3408.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3409 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3409.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3409.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G341 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G341.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G341.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3410 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3410.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3410.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3411 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3411.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3411.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3412 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3412.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3412.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3413 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3413.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3413.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3414 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3414.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3414.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3415 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3415.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3415.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3416 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3416.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3416.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3417 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3417.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3417.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3418 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3418.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3418.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3419 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3419.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3419.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G342 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G342.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G342.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3420 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3420.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3420.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3421 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3421.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3421.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3422 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3422.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3422.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3423 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3423.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3423.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3424 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3424.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3424.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3425 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3425.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3425.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3426 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3426.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3426.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3427 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3427.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3427.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3428 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3428.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3428.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3429 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3429.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3429.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G343 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G343.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G343.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3430 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3430.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3430.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3431 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3431.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3431.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3432 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3432.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3432.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3433 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3433.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3433.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3434 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3434.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3434.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3435 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3435.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3435.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3436 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3436.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3436.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3437 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3437.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3437.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3438 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3438.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3438.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3439 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3439.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3439.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G344 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G344.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G344.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3440 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3440.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3440.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3441 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3441.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3441.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3442 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3442.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3442.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3443 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3443.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3443.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3444 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3444.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3444.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3445 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3445.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3445.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3446 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3446.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3446.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3447 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3447.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3447.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3448 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3448.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3448.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3449 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3449.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3449.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G345 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G345.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G345.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3450 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3450.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3450.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3451 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3451.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3451.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3452 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3452.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3452.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3453 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3453.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3453.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3454 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3454.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3454.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3455 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3455.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3455.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3456 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3456.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3456.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3457 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3457.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3457.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3458 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3458.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3458.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3459 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3459.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3459.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G346 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G346.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G346.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3460 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3460.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3460.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3461 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3461.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3461.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3462 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3462.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3462.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3463 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3463.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3463.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3464 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3464.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3464.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3465 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3465.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3465.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3466 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3466.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3466.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3467 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3467.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3467.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3468 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3468.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3468.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3469 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3469.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3469.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G347 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G347.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G347.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3470 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3470.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3470.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3471 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3471.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3471.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3472 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3472.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3472.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3473 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3473.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3473.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3474 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3474.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3474.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3475 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3475.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3475.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3476 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3476.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3476.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3477 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3477.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3477.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3478 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3478.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3478.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3479 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3479.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3479.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G348 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G348.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G348.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3480 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3480.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3480.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3481 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3481.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3481.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3482 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3482.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3482.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3483 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3483.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3483.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3484 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3484.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3484.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3485 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3485.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3485.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3486 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3486.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3486.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3487 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3487.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3487.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3488 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3488.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3488.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3489 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3489.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3489.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G349 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G349.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G349.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3490 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3490.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3490.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3491 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3491.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3491.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3492 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3492.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3492.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3493 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3493.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3493.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3494 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3494.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3494.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3495 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3495.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3495.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3496 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3496.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3496.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3497 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3497.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3497.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3498 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3498.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3498.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3499 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3499.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3499.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G35 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G35.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G35.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G350 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G350.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G350.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3500 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3500.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3500.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3501 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3501.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3501.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3502 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3502.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3502.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3503 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3503.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3503.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3504 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3504.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3504.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3505 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3505.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3505.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3506 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3506.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3506.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3507 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3507.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3507.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3508 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3508.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3508.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3509 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3509.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3509.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G351 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G351.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G351.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3510 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3510.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3510.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3511 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3511.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3511.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3512 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3512.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3512.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3513 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3513.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3513.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3514 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3514.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3514.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3515 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3515.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3515.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3516 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3516.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3516.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3517 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3517.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3517.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3518 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3518.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3518.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3519 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3519.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3519.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G352 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G352.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G352.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3520 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3520.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3520.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3521 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3521.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3521.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3522 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3522.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3522.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3523 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3523.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3523.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3524 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3524.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3524.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3525 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3525.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3525.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3526 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3526.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3526.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3527 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3527.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3527.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3528 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3528.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3528.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3529 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3529.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3529.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G353 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G353.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G353.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3530 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3530.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3530.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3531 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3531.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3531.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3532 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3532.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3532.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3533 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3533.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3533.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3534 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3534.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3534.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3535 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3535.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3535.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3536 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3536.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3536.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3537 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3537.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3537.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3538 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3538.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3538.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3539 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3539.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3539.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G354 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G354.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G354.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3540 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3540.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3540.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3541 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3541.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3541.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3542 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3542.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3542.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3543 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3543.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3543.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3544 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3544.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3544.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3545 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3545.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3545.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3546 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3546.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3546.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3547 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3547.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3547.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3548 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3548.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3548.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3549 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3549.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3549.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G355 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G355.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G355.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3550 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3550.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3550.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3551 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3551.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3551.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3552 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3552.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3552.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3553 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3553.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3553.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3554 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3554.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3554.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3555 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3555.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3555.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3556 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3556.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3556.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3557 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3557.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3557.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3558 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3558.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3558.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3559 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3559.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3559.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G356 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G356.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G356.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3560 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3560.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3560.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3561 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3561.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3561.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3562 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3562.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3562.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3563 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3563.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3563.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3564 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3564.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3564.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3565 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3565.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3565.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3566 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3566.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3566.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3567 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3567.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3567.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3568 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3568.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3568.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3569 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3569.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3569.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G357 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G357.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G357.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3570 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3570.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3570.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3571 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3571.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3571.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3572 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3572.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3572.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3573 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3573.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3573.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3574 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3574.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3574.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3575 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3575.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3575.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3576 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3576.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3576.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3577 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3577.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3577.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3578 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3578.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3578.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3579 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3579.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3579.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G358 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G358.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G358.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3580 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3580.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3580.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3581 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3581.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3581.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3582 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3582.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3582.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3583 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3583.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3583.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3584 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3584.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3584.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3585 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3585.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3585.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3586 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3586.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3586.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3587 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3587.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3587.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3588 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3588.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3588.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3589 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3589.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3589.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G359 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G359.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G359.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3590 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3590.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3590.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3591 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3591.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3591.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3592 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3592.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3592.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3593 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3593.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3593.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3594 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3594.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3594.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3595 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3595.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3595.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3596 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3596.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3596.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3597 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3597.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3597.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3598 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3598.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3598.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3599 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3599.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3599.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G36 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G36.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G36.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G360 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G360.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G360.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3600 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3600.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3600.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3601 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3601.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3601.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3602 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3602.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3602.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3603 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3603.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3603.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3604 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3604.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3604.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3605 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3605.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3605.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3606 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3606.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3606.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3607 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3607.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3607.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3608 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3608.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3608.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3609 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3609.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3609.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G361 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G361.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G361.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3610 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3610.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3610.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3611 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3611.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3611.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3612 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3612.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3612.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3613 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3613.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3613.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3614 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3614.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3614.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3615 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3615.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3615.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3616 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3616.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3616.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3617 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3617.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3617.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3618 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3618.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3618.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3619 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3619.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3619.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G362 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G362.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G362.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3620 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3620.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3620.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3621 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3621.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3621.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3622 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3622.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3622.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3623 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3623.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3623.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3624 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3624.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3624.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3625 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3625.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3625.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3626 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3626.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3626.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3627 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3627.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3627.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3628 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3628.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3628.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3629 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3629.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3629.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G363 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G363.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G363.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3630 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3630.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3630.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3631 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3631.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3631.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3632 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3632.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3632.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3633 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3633.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3633.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3634 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3634.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3634.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3635 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3635.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3635.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3636 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3636.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3636.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3637 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3637.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3637.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3638 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3638.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3638.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3639 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3639.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3639.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G364 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G364.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G364.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3640 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3640.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3640.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3641 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3641.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3641.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3642 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3642.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3642.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3643 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3643.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3643.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3644 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3644.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3644.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3645 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3645.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3645.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3646 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3646.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3646.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3647 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3647.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3647.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3648 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3648.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3648.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3649 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3649.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3649.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G365 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G365.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G365.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3650 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3650.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3650.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3651 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3651.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3651.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3652 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3652.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3652.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3653 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3653.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3653.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3654 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3654.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3654.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3655 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3655.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3655.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3656 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3656.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3656.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3657 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3657.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3657.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3658 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3658.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3658.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3659 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3659.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3659.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G366 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G366.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G366.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3660 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3660.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3660.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3661 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3661.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3661.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3662 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3662.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3662.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3663 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3663.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3663.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3664 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3664.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3664.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3665 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3665.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3665.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3666 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3666.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3666.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3667 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3667.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3667.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3668 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3668.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3668.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3669 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3669.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3669.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G367 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G367.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G367.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3670 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3670.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3670.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3671 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3671.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3671.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3672 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3672.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3672.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3673 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3673.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3673.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3674 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3674.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3674.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3675 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3675.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3675.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3676 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3676.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3676.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3677 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3677.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3677.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3678 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3678.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3678.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3679 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3679.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3679.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G368 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G368.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G368.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3680 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3680.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3680.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3681 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3681.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3681.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3682 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3682.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3682.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3683 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3683.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3683.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3684 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3684.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3684.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3685 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3685.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3685.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3686 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3686.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3686.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3687 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3687.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3687.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3688 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3688.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3688.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3689 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3689.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3689.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G369 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G369.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G369.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3690 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3690.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3690.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3691 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3691.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3691.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3692 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3692.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3692.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3693 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3693.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3693.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3694 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3694.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3694.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3695 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3695.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3695.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3696 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3696.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3696.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3697 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3697.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3697.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3698 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3698.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3698.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3699 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3699.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3699.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G37 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G37.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G37.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G370 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G370.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G370.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3700 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3700.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3700.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3701 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3701.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3701.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3702 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3702.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3702.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3703 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3703.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3703.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3704 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3704.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3704.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3705 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3705.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3705.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3706 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3706.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3706.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3707 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3707.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3707.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3708 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3708.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3708.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3709 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3709.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3709.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G371 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G371.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G371.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3710 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3710.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3710.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3711 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3711.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3711.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3712 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3712.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3712.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3713 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3713.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3713.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3714 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3714.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3714.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3715 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3715.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3715.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3716 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3716.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3716.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3717 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3717.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3717.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3718 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3718.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3718.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3719 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3719.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3719.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G372 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G372.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G372.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3720 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3720.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3720.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3721 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3721.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3721.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3722 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3722.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3722.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3723 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3723.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3723.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3724 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3724.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3724.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3725 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3725.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3725.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3726 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3726.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3726.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3727 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3727.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3727.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3728 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3728.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3728.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3729 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3729.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3729.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G373 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G373.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G373.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3730 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3730.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3730.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3731 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3731.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3731.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3732 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3732.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3732.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3733 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3733.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3733.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3734 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3734.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3734.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3735 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3735.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3735.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3736 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3736.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3736.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3737 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3737.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3737.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3738 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3738.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3738.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3739 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3739.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3739.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G374 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G374.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G374.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3740 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3740.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3740.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3741 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3741.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3741.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3742 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3742.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3742.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3743 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3743.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3743.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3744 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3744.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3744.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3745 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3745.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3745.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3746 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3746.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3746.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3747 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3747.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3747.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3748 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3748.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3748.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3749 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3749.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3749.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G375 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G375.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G375.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3750 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3750.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3750.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3751 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3751.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3751.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3752 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3752.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3752.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3753 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3753.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3753.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3754 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3754.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3754.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3755 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3755.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3755.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3756 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3756.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3756.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3757 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3757.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3757.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3758 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3758.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3758.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3759 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3759.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3759.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G376 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G376.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G376.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3760 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3760.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3760.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3761 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3761.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3761.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3762 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3762.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3762.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3763 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3763.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3763.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3764 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3764.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3764.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3765 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3765.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3765.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3766 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3766.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3766.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3767 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3767.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3767.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3768 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3768.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3768.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3769 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3769.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3769.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G377 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G377.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G377.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3770 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3770.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3770.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3771 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3771.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3771.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3772 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3772.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3772.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3773 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3773.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3773.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3774 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3774.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3774.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3775 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3775.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3775.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3776 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3776.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3776.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3777 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3777.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3777.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3778 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3778.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3778.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3779 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3779.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3779.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G378 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G378.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G378.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3780 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3780.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3780.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3781 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3781.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3781.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3782 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3782.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3782.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3783 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3783.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3783.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3784 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3784.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3784.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3785 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3785.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3785.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3786 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3786.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3786.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3787 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3787.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3787.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3788 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3788.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3788.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3789 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3789.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3789.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G379 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G379.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G379.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3790 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3790.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3790.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3791 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3791.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3791.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3792 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3792.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3792.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3793 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3793.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3793.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3794 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3794.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3794.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3795 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3795.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3795.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3796 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3796.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3796.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3797 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3797.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3797.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3798 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3798.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3798.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3799 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3799.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3799.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G38 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G38.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G38.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G380 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G380.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G380.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3800 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3800.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3800.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3801 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3801.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3801.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3802 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3802.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3802.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3803 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3803.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3803.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3804 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3804.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3804.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3805 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3805.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3805.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3806 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3806.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3806.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3807 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3807.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3807.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3808 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3808.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3808.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3809 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3809.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3809.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G381 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G381.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G381.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3810 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3810.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3810.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3811 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3811.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3811.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3812 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3812.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3812.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3813 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3813.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3813.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3814 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3814.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3814.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3815 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3815.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3815.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3816 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3816.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3816.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3817 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3817.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3817.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3818 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3818.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3818.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3819 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3819.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3819.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G382 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G382.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G382.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3820 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3820.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3820.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3821 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3821.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3821.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3822 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3822.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3822.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3823 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3823.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3823.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3824 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3824.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3824.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3825 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3825.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3825.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3826 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3826.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3826.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3827 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3827.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3827.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3828 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3828.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3828.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3829 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3829.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3829.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G383 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G383.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G383.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3830 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3830.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3830.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3831 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3831.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3831.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3832 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3832.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3832.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3833 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3833.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3833.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3834 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3834.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3834.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3835 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3835.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3835.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3836 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3836.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3836.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3837 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3837.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3837.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3838 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3838.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3838.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3839 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3839.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3839.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G384 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G384.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G384.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3840 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3840.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3840.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3841 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3841.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3841.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3842 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3842.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3842.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3843 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3843.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3843.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3844 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3844.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3844.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3845 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3845.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3845.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3846 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3846.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3846.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3847 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3847.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3847.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3848 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3848.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3848.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3849 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3849.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3849.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G385 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G385.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G385.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3850 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3850.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3850.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3851 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3851.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3851.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3852 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3852.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3852.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3853 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3853.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3853.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3854 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3854.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3854.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3855 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3855.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3855.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3856 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3856.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3856.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3857 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3857.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3857.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3858 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3858.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3858.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3859 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3859.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3859.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G386 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G386.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G386.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3860 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3860.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3860.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3861 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3861.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3861.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3862 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3862.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3862.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3863 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3863.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3863.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3864 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3864.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3864.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3865 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3865.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3865.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3866 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3866.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3866.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3867 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3867.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3867.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3868 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3868.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3868.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3869 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3869.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3869.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G387 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G387.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G387.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3870 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3870.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3870.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3871 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3871.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3871.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3872 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3872.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3872.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3873 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3873.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3873.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3874 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3874.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3874.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3875 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3875.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3875.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3876 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3876.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3876.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3877 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3877.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3877.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3878 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3878.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3878.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3879 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3879.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3879.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G388 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G388.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G388.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3880 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3880.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3880.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3881 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3881.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3881.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3882 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3882.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3882.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3883 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3883.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3883.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3884 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3884.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3884.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3885 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3885.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3885.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3886 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3886.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3886.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3887 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3887.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3887.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3888 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3888.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3888.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3889 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3889.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3889.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G389 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G389.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G389.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3890 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3890.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3890.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3891 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3891.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3891.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3892 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3892.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3892.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3893 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3893.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3893.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3894 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3894.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3894.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3895 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3895.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3895.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3896 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3896.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3896.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3897 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3897.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3897.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3898 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3898.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3898.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3899 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3899.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3899.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G39 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G39.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G39.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G390 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G390.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G390.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3900 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3900.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3900.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3901 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3901.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3901.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3902 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3902.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3902.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3903 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3903.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3903.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3904 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3904.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3904.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3905 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3905.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3905.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3906 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3906.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3906.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3907 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3907.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3907.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3908 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3908.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3908.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3909 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3909.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3909.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G391 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G391.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G391.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3910 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3910.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3910.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3911 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3911.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3911.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3912 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3912.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3912.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3913 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3913.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3913.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3914 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3914.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3914.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3915 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3915.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3915.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3916 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3916.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3916.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3917 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3917.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3917.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3918 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3918.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3918.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3919 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3919.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3919.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G392 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G392.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G392.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3920 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3920.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3920.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3921 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3921.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3921.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3922 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3922.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3922.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3923 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3923.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3923.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3924 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3924.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3924.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3925 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3925.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3925.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3926 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3926.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3926.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3927 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3927.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3927.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3928 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3928.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3928.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3929 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3929.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3929.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G393 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G393.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G393.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3930 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3930.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3930.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3931 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3931.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3931.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3932 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3932.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3932.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3933 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3933.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3933.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3934 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3934.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3934.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3935 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3935.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3935.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3936 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3936.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3936.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3937 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3937.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3937.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3938 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3938.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3938.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3939 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3939.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3939.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G394 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G394.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G394.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3940 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3940.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3940.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3941 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3941.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3941.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3942 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3942.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3942.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3943 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3943.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3943.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3944 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3944.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3944.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3945 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3945.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3945.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3946 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3946.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3946.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3947 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3947.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3947.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3948 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3948.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3948.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3949 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3949.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3949.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G395 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G395.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G395.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3950 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3950.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3950.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3951 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3951.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3951.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3952 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3952.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3952.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3953 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3953.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3953.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3954 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3954.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3954.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3955 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3955.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3955.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3956 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3956.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3956.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3957 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3957.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3957.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3958 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3958.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3958.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3959 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3959.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3959.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G396 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G396.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G396.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3960 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3960.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3960.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3961 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3961.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3961.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3962 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3962.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3962.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3963 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3963.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3963.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3964 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3964.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3964.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3965 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3965.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3965.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3966 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3966.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3966.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3967 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3967.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3967.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3968 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3968.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3968.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3969 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3969.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3969.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G397 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G397.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G397.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3970 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3970.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3970.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3971 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3971.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3971.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3972 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3972.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3972.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3973 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3973.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3973.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3974 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3974.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3974.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3975 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3975.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3975.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3976 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3976.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3976.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3977 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3977.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3977.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3978 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3978.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3978.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3979 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3979.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3979.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G398 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G398.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G398.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3980 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3980.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3980.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3981 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3981.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3981.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3982 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3982.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3982.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3983 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3983.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3983.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3984 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3984.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3984.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3985 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3985.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3985.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3986 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3986.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3986.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3987 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3987.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3987.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3988 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3988.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3988.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3989 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3989.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3989.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G399 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G399.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G399.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3990 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3990.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3990.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3991 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3991.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3991.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3992 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3992.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3992.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3993 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3993.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3993.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3994 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3994.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3994.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3995 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3995.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3995.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3996 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3996.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3996.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3997 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3997.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3997.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3998 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3998.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3998.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3999 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3999.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G3999.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G40 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G40.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G40.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G400 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G400.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G400.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4000 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4000.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4000.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4001 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4001.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4001.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4002 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4002.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4002.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4003 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4003.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4003.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4004 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4004.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4004.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4005 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4005.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4005.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4006 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4006.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4006.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4007 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4007.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4007.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4008 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4008.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4008.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4009 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4009.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4009.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G401 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G401.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G401.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4010 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4010.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4010.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4011 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4011.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4011.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4012 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4012.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4012.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4013 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4013.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4013.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4014 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4014.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4014.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4015 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4015.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4015.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4016 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4016.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4016.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4017 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4017.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4017.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4018 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4018.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4018.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4019 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4019.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4019.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G402 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G402.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G402.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4020 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4020.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4020.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4021 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4021.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4021.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4022 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4022.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4022.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4023 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4023.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4023.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4024 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4024.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4024.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4025 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4025.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4025.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4026 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4026.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4026.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4027 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4027.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4027.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4028 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4028.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4028.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4029 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4029.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4029.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G403 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G403.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G403.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4030 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4030.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4030.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4031 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4031.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4031.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4032 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4032.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4032.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4033 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4033.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4033.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4034 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4034.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4034.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4035 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4035.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4035.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4036 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4036.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4036.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4037 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4037.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4037.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4038 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4038.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4038.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4039 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4039.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4039.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G404 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G404.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G404.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4040 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4040.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4040.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4041 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4041.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4041.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4042 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4042.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4042.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4043 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4043.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4043.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4044 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4044.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4044.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4045 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4045.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4045.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4046 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4046.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4046.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4047 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4047.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4047.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4048 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4048.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4048.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4049 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4049.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4049.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G405 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G405.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G405.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4050 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4050.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4050.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4051 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4051.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4051.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4052 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4052.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4052.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4053 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4053.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4053.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4054 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4054.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4054.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4055 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4055.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4055.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4056 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4056.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4056.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4057 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4057.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4057.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4058 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4058.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4058.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4059 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4059.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4059.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G406 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G406.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G406.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4060 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4060.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4060.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4061 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4061.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4061.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4062 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4062.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4062.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4063 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4063.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4063.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4064 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4064.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4064.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4065 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4065.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4065.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4066 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4066.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4066.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4067 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4067.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4067.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4068 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4068.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4068.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4069 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4069.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4069.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G407 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G407.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G407.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4070 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4070.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4070.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4071 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4071.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4071.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4072 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4072.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4072.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4073 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4073.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4073.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4074 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4074.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4074.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4075 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4075.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4075.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4076 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4076.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4076.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4077 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4077.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4077.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4078 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4078.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4078.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4079 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4079.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4079.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G408 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G408.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G408.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4080 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4080.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4080.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4081 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4081.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4081.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4082 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4082.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4082.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4083 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4083.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4083.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4084 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4084.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4084.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4085 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4085.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4085.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4086 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4086.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4086.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4087 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4087.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4087.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4088 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4088.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4088.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4089 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4089.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4089.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G409 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G409.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G409.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4090 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4090.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4090.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4091 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4091.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4091.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4092 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4092.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4092.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4093 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4093.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4093.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4094 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4094.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4094.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4095 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4095.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4095.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4096 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4096.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4096.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4097 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4097.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4097.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4098 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4098.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4098.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4099 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4099.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4099.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G41 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G41.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G41.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G410 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G410.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G410.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G411 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G411.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G411.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G412 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G412.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G412.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G413 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G413.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G413.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G414 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G414.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G414.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G415 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G415.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G415.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G416 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G416.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G416.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G417 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G417.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G417.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G418 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G418.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G418.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G419 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G419.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G419.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G42 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G42.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G42.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G420 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G420.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G420.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G421 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G421.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G421.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G422 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G422.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G422.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G423 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G423.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G423.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G424 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G424.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G424.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G4244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G425 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G425.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G425.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G426 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G426.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G426.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G427 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G427.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G427.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G428 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G428.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G428.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G429 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G429.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G429.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G43 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G43.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G43.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G430 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G430.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G430.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G431 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G431.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G431.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G432 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G432.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G432.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G433 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G433.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G433.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G434 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G434.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G434.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G435 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G435.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G435.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G436 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G436.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G436.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G437 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G437.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G437.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G438 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G438.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G438.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G439 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G439.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G439.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G44 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G44.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G44.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G440 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G440.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G440.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G441 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G441.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G441.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G442 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G442.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G442.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G443 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G443.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G443.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G444 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G444.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G444.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G445 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G445.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G445.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G446 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G446.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G446.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G447 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G447.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G447.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G448 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G448.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G448.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G449 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G449.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G449.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G45 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G45.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G45.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G450 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G450.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G450.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G451 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G451.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G451.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G452 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G452.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G452.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G453 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G453.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G453.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G454 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G454.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G454.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G455 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G455.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G455.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G456 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G456.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G456.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G457 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G457.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G457.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G458 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G458.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G458.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G459 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G459.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G459.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G46 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G46.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G46.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G460 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G460.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G460.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G461 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G461.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G461.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G462 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G462.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G462.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G463 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G463.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G463.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G464 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G464.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G464.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G465 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G465.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G465.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G466 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G466.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G466.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G467 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G467.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G467.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G468 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G468.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G468.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G469 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G469.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G469.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G47 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G47.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G47.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G470 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G470.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G470.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G471 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G471.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G471.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G472 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G472.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G472.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G473 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G473.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G473.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G474 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G474.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G474.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G475 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G475.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G475.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G476 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G476.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G476.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G477 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G477.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G477.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G478 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G478.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G478.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G479 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G479.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G479.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G48 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G48.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G48.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G480 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G480.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G480.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G481 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G481.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G481.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G482 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G482.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G482.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G483 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G483.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G483.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G484 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G484.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G484.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G485 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G485.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G485.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G486 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G486.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G486.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G487 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G487.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G487.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G488 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G488.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G488.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G489 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G489.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G489.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G49 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G49.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G49.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G490 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G490.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G490.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G491 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G491.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G491.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G492 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G492.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G492.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G493 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G493.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G493.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G494 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G494.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G494.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G495 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G495.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G495.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G496 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G496.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G496.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G497 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G497.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G497.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G498 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G498.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G498.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G499 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G499.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G499.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G5 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G5.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G5.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G50 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G50.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G50.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G500 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G500.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G500.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G501 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G501.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G501.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G502 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G502.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G502.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G503 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G503.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G503.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G504 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G504.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G504.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G505 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G505.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G505.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G506 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G506.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G506.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G507 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G507.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G507.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G508 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G508.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G508.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G509 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G509.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G509.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G51 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G51.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G51.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G510 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G510.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G510.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G511 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G511.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G511.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G512 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G512.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G512.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G513 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G513.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G513.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G514 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G514.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G514.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G515 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G515.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G515.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G516 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G516.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G516.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G517 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G517.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G517.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G518 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G518.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G518.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G519 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G519.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G519.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G52 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G52.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G52.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G520 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G520.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G520.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G521 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G521.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G521.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G522 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G522.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G522.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G523 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G523.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G523.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G524 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G524.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G524.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G525 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G525.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G525.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G526 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G526.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G526.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G527 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G527.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G527.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G528 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G528.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G528.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G529 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G529.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G529.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G53 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G53.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G53.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G530 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G530.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G530.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G531 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G531.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G531.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G532 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G532.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G532.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G533 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G533.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G533.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G534 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G534.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G534.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G535 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G535.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G535.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G536 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G536.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G536.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G537 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G537.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G537.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G538 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G538.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G538.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G539 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G539.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G539.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G54 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G54.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G54.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G540 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G540.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G540.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G541 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G541.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G541.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G542 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G542.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G542.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G543 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G543.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G543.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G544 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G544.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G544.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G545 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G545.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G545.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G546 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G546.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G546.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G547 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G547.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G547.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G548 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G548.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G548.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G549 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G549.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G549.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G55 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G55.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G55.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G550 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G550.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G550.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G551 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G551.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G551.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G552 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G552.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G552.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G553 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G553.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G553.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G554 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G554.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G554.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G555 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G555.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G555.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G556 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G556.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G556.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G557 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G557.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G557.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G558 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G558.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G558.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G559 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G559.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G559.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G56 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G56.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G56.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G560 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G560.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G560.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G561 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G561.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G561.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G562 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G562.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G562.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G563 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G563.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G563.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G564 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G564.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G564.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G565 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G565.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G565.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G566 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G566.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G566.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G567 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G567.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G567.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G568 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G568.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G568.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G569 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G569.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G569.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G57 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G57.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G57.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G570 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G570.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G570.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G571 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G571.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G571.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G572 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G572.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G572.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G573 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G573.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G573.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G574 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G574.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G574.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G575 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G575.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G575.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G576 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G576.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G576.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G577 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G577.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G577.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G578 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G578.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G578.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G579 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G579.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G579.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G58 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G58.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G58.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G580 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G580.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G580.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G581 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G581.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G581.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G582 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G582.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G582.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G583 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G583.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G583.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G584 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G584.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G584.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G585 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G585.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G585.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G586 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G586.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G586.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G587 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G587.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G587.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G588 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G588.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G588.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G589 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G589.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G589.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G59 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G59.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G59.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G590 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G590.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G590.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G591 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G591.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G591.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G592 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G592.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G592.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G593 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G593.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G593.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G594 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G594.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G594.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G595 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G595.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G595.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G596 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G596.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G596.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G597 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G597.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G597.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G598 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G598.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G598.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G599 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G599.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G599.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G6 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G6.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G6.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G60 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G60.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G60.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G600 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G600.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G600.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G601 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G601.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G601.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G602 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G602.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G602.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G603 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G603.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G603.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G604 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G604.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G604.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G605 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G605.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G605.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G606 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G606.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G606.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G607 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G607.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G607.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G608 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G608.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G608.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G609 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G609.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G609.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G61 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G61.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G61.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G610 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G610.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G610.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G611 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G611.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G611.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G612 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G612.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G612.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G613 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G613.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G613.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G614 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G614.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G614.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G615 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G615.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G615.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G616 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G616.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G616.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G617 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G617.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G617.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G618 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G618.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G618.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G619 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G619.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G619.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G62 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G62.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G62.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G620 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G620.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G620.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G621 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G621.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G621.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G622 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G622.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G622.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G623 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G623.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G623.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G624 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G624.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G624.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G625 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G625.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G625.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G626 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G626.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G626.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G627 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G627.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G627.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G628 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G628.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G628.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G629 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G629.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G629.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G63 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G63.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G63.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G630 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G630.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G630.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G631 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G631.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G631.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G632 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G632.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G632.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G633 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G633.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G633.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G634 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G634.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G634.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G635 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G635.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G635.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G636 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G636.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G636.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G637 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G637.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G637.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G638 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G638.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G638.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G639 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G639.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G639.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G64 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G64.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G64.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G640 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G640.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G640.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G641 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G641.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G641.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G642 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G642.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G642.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G643 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G643.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G643.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G644 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G644.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G644.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G645 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G645.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G645.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G646 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G646.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G646.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G647 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G647.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G647.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G648 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G648.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G648.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G649 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G649.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G649.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G65 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G65.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G65.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G650 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G650.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G650.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G651 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G651.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G651.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G652 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G652.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G652.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G653 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G653.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G653.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G654 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G654.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G654.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G655 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G655.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G655.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G656 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G656.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G656.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G657 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G657.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G657.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G658 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G658.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G658.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G659 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G659.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G659.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G66 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G66.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G66.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G660 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G660.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G660.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G661 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G661.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G661.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G662 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G662.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G662.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G663 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G663.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G663.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G664 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G664.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G664.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G665 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G665.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G665.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G666 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G666.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G666.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G667 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G667.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G667.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G668 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G668.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G668.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G669 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G669.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G669.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G67 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G67.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G67.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G670 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G670.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G670.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G671 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G671.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G671.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G672 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G672.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G672.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G673 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G673.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G673.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G674 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G674.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G674.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G675 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G675.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G675.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G676 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G676.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G676.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G677 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G677.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G677.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G678 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G678.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G678.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G679 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G679.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G679.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G68 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G68.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G68.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G680 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G680.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G680.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G681 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G681.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G681.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G682 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G682.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G682.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G683 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G683.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G683.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G684 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G684.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G684.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G685 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G685.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G685.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G686 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G686.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G686.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G687 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G687.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G687.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G688 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G688.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G688.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G689 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G689.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G689.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G69 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G69.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G69.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G690 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G690.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G690.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G691 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G691.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G691.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G692 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G692.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G692.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G693 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G693.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G693.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G694 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G694.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G694.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G695 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G695.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G695.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G696 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G696.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G696.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G697 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G697.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G697.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G698 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G698.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G698.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G699 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G699.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G699.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G7 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G7.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G7.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G70 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G70.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G70.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G700 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G700.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G700.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G701 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G701.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G701.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G702 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G702.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G702.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G703 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G703.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G703.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G704 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G704.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G704.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G705 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G705.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G705.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G706 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G706.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G706.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G707 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G707.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G707.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G708 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G708.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G708.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G709 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G709.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G709.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G71 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G71.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G71.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G710 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G710.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G710.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G711 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G711.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G711.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G712 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G712.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G712.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G713 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G713.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G713.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G714 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G714.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G714.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G715 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G715.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G715.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G716 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G716.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G716.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G717 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G717.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G717.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G718 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G718.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G718.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G719 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G719.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G719.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G72 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G72.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G72.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G720 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G720.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G720.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G721 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G721.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G721.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G722 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G722.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G722.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G723 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G723.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G723.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G724 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G724.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G724.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G725 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G725.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G725.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G726 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G726.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G726.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G727 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G727.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G727.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G728 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G728.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G728.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G729 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G729.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G729.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G73 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G73.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G73.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G730 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G730.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G730.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G731 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G731.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G731.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G732 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G732.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G732.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G733 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G733.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G733.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G734 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G734.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G734.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G735 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G735.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G735.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G736 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G736.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G736.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G737 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G737.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G737.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G738 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G738.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G738.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G739 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G739.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G739.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G74 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G74.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G74.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G740 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G740.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G740.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G741 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G741.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G741.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G742 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G742.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G742.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G743 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G743.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G743.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G744 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G744.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G744.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G745 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G745.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G745.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G746 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G746.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G746.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G747 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G747.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G747.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G748 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G748.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G748.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G749 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G749.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G749.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G75 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G75.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G75.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G750 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G750.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G750.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G751 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G751.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G751.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G752 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G752.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G752.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G753 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G753.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G753.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G754 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G754.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G754.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G755 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G755.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G755.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G756 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G756.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G756.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G757 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G757.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G757.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G758 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G758.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G758.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G759 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G759.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G759.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G76 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G76.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G76.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G760 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G760.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G760.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G761 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G761.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G761.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G762 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G762.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G762.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G763 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G763.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G763.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G764 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G764.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G764.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G765 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G765.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G765.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G766 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G766.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G766.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G767 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G767.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G767.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G768 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G768.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G768.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G769 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G769.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G769.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G77 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G77.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G77.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G770 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G770.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G770.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G771 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G771.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G771.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G772 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G772.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G772.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G773 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G773.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G773.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G774 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G774.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G774.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G775 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G775.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G775.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G776 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G776.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G776.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G777 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G777.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G777.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G778 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G778.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G778.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G779 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G779.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G779.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G78 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G78.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G78.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G780 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G780.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G780.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G781 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G781.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G781.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G782 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G782.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G782.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G783 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G783.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G783.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G784 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G784.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G784.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G785 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G785.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G785.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G786 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G786.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G786.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G787 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G787.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G787.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G788 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G788.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G788.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G789 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G789.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G789.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G79 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G79.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G79.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G790 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G790.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G790.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G791 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G791.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G791.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G792 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G792.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G792.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G793 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G793.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G793.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G794 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G794.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G794.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G795 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G795.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G795.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G796 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G796.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G796.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G797 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G797.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G797.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G798 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G798.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G798.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G799 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G799.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G799.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G8 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G8.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G8.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G80 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G80.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G80.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G800 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G800.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G800.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G801 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G801.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G801.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G802 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G802.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G802.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G803 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G803.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G803.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G804 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G804.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G804.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G805 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G805.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G805.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G806 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G806.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G806.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G807 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G807.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G807.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G808 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G808.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G808.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G809 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G809.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G809.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G81 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G81.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G81.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G810 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G810.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G810.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G811 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G811.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G811.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G812 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G812.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G812.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G813 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G813.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G813.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G814 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G814.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G814.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G815 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G815.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G815.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G816 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G816.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G816.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G817 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G817.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G817.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G818 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G818.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G818.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G819 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G819.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G819.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G82 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G82.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G82.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G820 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G820.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G820.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G821 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G821.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G821.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G822 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G822.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G822.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G823 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G823.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G823.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G824 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G824.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G824.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G825 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G825.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G825.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G826 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G826.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G826.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G827 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G827.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G827.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G828 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G828.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G828.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G829 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G829.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G829.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G83 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G83.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G83.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G830 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G830.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G830.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G831 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G831.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G831.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G832 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G832.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G832.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G833 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G833.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G833.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G834 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G834.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G834.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G835 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G835.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G835.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G836 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G836.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G836.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G837 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G837.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G837.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G838 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G838.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G838.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G839 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G839.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G839.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G84 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G84.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G84.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G840 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G840.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G840.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G841 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G841.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G841.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G842 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G842.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G842.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G843 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G843.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G843.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G844 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G844.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G844.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G845 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G845.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G845.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G846 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G846.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G846.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G847 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G847.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G847.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G848 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G848.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G848.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G849 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G849.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G849.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G85 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G85.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G85.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G850 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G850.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G850.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G851 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G851.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G851.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G852 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G852.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G852.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G853 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G853.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G853.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G854 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G854.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G854.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G855 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G855.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G855.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G856 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G856.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G856.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G857 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G857.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G857.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G858 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G858.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G858.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G859 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G859.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G859.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G86 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G86.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G86.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G860 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G860.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G860.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G861 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G861.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G861.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G862 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G862.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G862.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G863 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G863.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G863.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G864 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G864.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G864.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G865 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G865.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G865.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G866 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G866.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G866.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G867 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G867.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G867.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G868 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G868.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G868.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G869 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G869.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G869.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G87 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G87.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G87.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G870 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G870.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G870.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G871 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G871.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G871.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G872 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G872.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G872.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G873 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G873.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G873.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G874 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G874.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G874.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G875 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G875.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G875.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G876 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G876.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G876.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G877 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G877.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G877.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G878 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G878.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G878.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G879 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G879.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G879.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G88 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G88.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G88.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G880 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G880.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G880.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G881 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G881.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G881.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G882 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G882.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G882.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G883 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G883.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G883.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G884 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G884.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G884.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G885 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G885.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G885.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G886 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G886.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G886.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G887 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G887.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G887.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G888 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G888.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G888.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G889 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G889.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G889.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G89 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G89.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G89.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G890 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G890.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G890.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G891 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G891.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G891.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G892 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G892.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G892.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G893 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G893.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G893.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G894 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G894.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G894.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G895 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G895.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G895.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G896 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G896.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G896.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G897 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G897.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G897.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G898 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G898.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G898.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G899 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G899.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G899.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G9 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G9.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G9.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G90 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G90.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G90.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G900 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G900.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G900.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G901 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G901.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G901.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G902 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G902.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G902.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G903 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G903.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G903.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G904 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G904.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G904.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G905 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G905.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G905.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G906 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G906.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G906.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G907 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G907.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G907.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G908 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G908.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G908.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G909 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G909.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G909.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G91 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G91.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G91.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G910 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G910.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G910.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G911 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G911.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G911.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G912 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G912.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G912.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G913 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G913.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G913.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G914 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G914.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G914.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G915 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G915.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G915.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G916 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G916.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G916.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G917 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G917.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G917.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G918 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G918.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G918.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G919 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G919.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G919.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G92 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G92.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G92.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G920 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G920.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G920.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G921 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G921.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G921.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G922 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G922.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G922.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G923 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G923.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G923.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G924 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G924.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G924.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G925 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G925.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G925.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G926 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G926.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G926.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G927 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G927.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G927.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G928 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G928.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G928.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G929 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G929.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G929.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G93 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G93.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G93.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G930 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G930.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G930.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G931 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G931.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G931.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G932 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G932.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G932.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G933 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G933.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G933.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G934 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G934.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G934.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G935 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G935.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G935.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G936 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G936.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G936.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G937 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G937.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G937.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G938 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G938.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G938.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G939 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G939.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G939.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G94 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G94.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G94.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G940 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G940.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G940.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G941 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G941.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G941.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G942 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G942.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G942.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G943 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G943.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G943.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G944 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G944.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G944.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G945 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G945.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G945.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G946 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G946.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G946.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G947 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G947.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G947.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G948 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G948.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G948.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G949 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G949.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G949.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G95 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G95.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G95.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G950 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G950.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G950.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G951 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G951.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G951.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G952 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G952.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G952.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G953 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G953.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G953.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G954 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G954.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G954.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G955 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G955.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G955.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G956 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G956.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G956.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G957 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G957.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G957.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G958 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G958.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G958.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G959 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G959.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G959.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G96 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G96.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G96.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G960 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G960.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G960.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G961 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G961.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G961.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G962 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G962.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G962.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G963 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G963.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G963.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G964 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G964.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G964.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G965 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G965.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G965.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G966 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G966.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G966.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G967 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G967.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G967.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G968 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G968.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G968.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G969 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G969.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G969.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G97 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G97.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G97.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G970 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G970.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G970.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G971 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G971.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G971.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G972 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G972.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G972.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G973 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G973.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G973.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G974 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G974.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G974.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G975 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G975.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G975.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G976 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G976.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G976.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G977 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G977.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G977.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G978 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G978.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G978.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G979 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G979.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G979.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G98 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G98.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G98.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G980 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G980.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G980.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G981 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G981.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G981.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G982 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G982.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G982.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G983 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G983.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G983.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G984 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G984.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G984.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G985 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G985.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G985.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G986 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G986.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G986.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G987 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G987.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G987.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G988 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G988.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G988.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G989 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G989.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G989.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G99 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G99.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G99.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G990 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G990.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G990.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G991 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G991.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G991.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G992 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G992.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G992.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G993 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G993.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G993.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G994 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G994.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G994.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G995 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G995.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G995.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G996 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G996.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G996.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G997 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G997.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G997.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G998 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G998.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G998.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G999 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G999.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-mm10.generic-A-C-T-G999.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only0 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only0.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only0.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only1 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only1.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only1.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only10 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only10.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only10.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only100 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only100.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only100.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only101 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only101.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only101.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only102 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only102.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only102.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only103 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only103.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only103.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only104 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only104.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only104.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only105 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only105.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only105.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only106 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only106.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only106.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only107 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only107.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only107.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only108 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only108.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only108.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only109 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only109.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only109.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only11 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only11.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only11.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only110 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only110.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only110.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only111 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only111.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only111.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only112 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only112.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only112.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only113 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only113.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only113.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only114 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only114.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only114.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only115 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only115.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only115.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only116 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only116.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only116.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only117 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only117.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only117.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only118 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only118.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only118.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only119 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only119.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only119.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only12 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only12.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only12.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only120 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only120.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only120.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only121 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only121.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only121.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only122 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only122.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only122.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only123 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only123.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only123.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only124 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only124.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only124.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only125 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only125.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only125.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only126 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only126.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only126.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only127 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only127.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only127.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only128 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only128.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only128.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only129 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only129.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only129.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only13 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only13.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only13.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only130 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only130.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only130.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only131 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only131.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only131.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only132 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only132.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only132.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only133 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only133.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only133.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only134 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only134.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only134.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only135 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only135.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only135.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only136 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only136.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only136.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only137 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only137.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only137.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only138 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only138.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only138.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only139 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only139.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only139.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only14 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only14.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only14.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only140 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only140.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only140.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only141 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only141.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only141.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only142 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only142.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only142.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only143 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only143.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only143.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only144 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only144.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only144.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only145 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only145.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only145.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only146 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only146.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only146.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only147 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only147.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only147.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only148 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only148.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only148.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only149 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only149.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only149.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only15 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only15.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only15.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only150 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only150.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only150.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only151 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only151.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only151.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only152 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only152.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only152.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only153 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only153.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only153.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only154 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only154.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only154.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only155 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only155.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only155.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only156 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only156.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only156.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only157 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only157.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only157.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only158 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only158.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only158.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only159 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only159.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only159.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only16 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only16.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only16.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only160 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only160.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only160.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only161 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only161.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only161.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only162 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only162.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only162.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only163 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only163.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only163.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only164 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only164.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only164.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only165 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only165.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only165.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only166 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only166.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only166.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only167 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only167.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only167.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only168 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only168.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only168.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only169 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only169.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only169.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only17 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only17.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only17.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only170 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only170.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only170.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only171 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only171.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only171.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only172 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only172.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only172.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only173 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only173.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only173.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only174 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only174.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only174.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only175 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only175.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only175.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only176 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only176.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only176.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only177 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only177.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only177.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only178 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only178.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only178.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only179 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only179.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only179.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only18 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only18.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only18.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only180 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only180.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only180.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only181 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only181.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only181.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only182 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only182.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only182.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only183 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only183.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only183.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only184 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only184.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only184.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only185 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only185.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only185.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only186 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only186.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only186.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only187 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only187.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only187.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only188 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only188.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only188.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only189 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only189.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only189.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only19 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only19.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only19.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only190 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only190.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only190.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only191 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only191.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only191.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only192 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only192.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only192.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only193 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only193.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only193.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only194 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only194.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only194.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only195 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only195.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only195.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only196 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only196.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only196.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only197 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only197.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only197.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only198 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only198.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only198.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only199 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only199.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only199.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only2 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only2.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only2.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only20 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only20.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only20.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only200 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only200.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only200.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only201 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only201.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only201.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only202 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only202.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only202.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only203 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only203.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only203.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only204 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only204.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only204.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only205 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only205.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only205.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only206 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only206.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only206.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only207 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only207.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only207.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only208 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only208.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only208.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only209 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only209.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only209.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only21 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only21.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only21.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only210 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only210.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only210.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only211 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only211.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only211.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only212 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only212.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only212.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only213 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only213.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only213.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only214 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only214.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only214.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only215 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only215.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only215.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only216 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only216.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only216.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only217 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only217.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only217.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only218 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only218.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only218.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only219 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only219.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only219.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only22 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only22.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only22.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only220 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only220.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only220.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only221 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only221.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only221.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only222 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only222.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only222.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only223 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only223.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only223.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only224 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only224.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only224.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only225 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only225.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only225.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only226 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only226.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only226.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only227 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only227.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only227.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only228 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only228.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only228.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only229 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only229.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only229.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only23 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only23.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only23.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only230 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only230.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only230.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only231 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only231.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only231.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only232 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only232.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only232.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only233 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only233.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only233.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only234 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only234.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only234.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only235 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only235.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only235.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only236 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only236.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only236.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only237 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only237.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only237.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only238 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only238.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only238.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only239 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only239.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only239.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only24 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only24.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only24.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only240 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only240.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only240.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only241 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only241.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only241.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only242 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only242.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only242.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only243 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only243.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only243.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only244 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only244.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only244.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only245 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only245.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only245.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only246 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only246.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only246.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only247 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only247.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only247.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only248 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only248.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only248.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only249 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only249.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only249.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only25 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only25.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only25.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only250 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only250.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only250.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only251 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only251.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only251.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only252 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only252.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only252.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only253 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only253.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only253.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only254 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only254.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only254.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only255 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only255.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only255.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only256 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only256.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only256.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only257 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only257.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only257.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only258 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only258.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only258.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only259 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only259.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only259.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only26 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only26.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only26.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only260 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only260.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only260.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only261 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only261.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only261.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only262 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only262.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only262.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only263 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only263.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only263.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only264 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only264.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only264.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only265 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only265.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only265.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only266 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only266.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only266.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only267 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only267.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only267.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only268 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only268.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only268.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only269 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only269.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only269.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only27 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only27.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only27.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only28 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only28.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only28.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only29 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only29.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only29.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only3 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only3.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only3.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only30 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only30.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only30.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only31 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only31.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only31.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only32 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only32.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only32.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only33 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only33.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only33.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only34 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only34.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only34.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only35 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only35.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only35.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only36 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only36.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only36.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only37 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only37.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only37.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only38 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only38.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only38.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only39 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only39.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only39.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only4 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only4.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only4.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only40 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only40.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only40.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only41 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only41.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only41.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only42 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only42.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only42.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only43 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only43.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only43.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only44 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only44.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only44.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only45 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only45.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only45.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only46 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only46.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only46.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only47 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only47.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only47.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only48 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only48.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only48.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only49 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only49.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only49.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only5 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only5.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only5.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only50 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only50.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only50.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only51 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only51.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only51.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only52 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only52.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only52.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only53 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only53.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only53.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only54 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only54.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only54.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only55 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only55.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only55.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only56 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only56.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only56.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only57 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only57.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only57.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only58 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only58.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only58.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only59 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only59.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only59.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only6 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only6.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only6.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only60 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only60.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only60.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only61 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only61.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only61.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only62 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only62.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only62.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only63 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only63.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only63.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only64 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only64.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only64.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only65 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only65.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only65.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only66 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only66.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only66.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only67 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only67.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only67.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only68 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only68.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only68.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only69 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only69.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only69.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only7 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only7.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only7.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only70 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only70.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only70.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only71 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only71.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only71.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only72 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only72.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only72.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only73 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only73.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only73.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only74 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only74.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only74.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only75 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only75.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only75.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only76 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only76.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only76.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only77 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only77.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only77.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only78 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only78.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only78.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only79 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only79.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only79.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only8 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only8.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only8.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only80 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only80.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only80.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only81 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only81.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only81.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only82 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only82.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only82.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only83 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only83.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only83.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only84 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only84.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only84.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only85 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only85.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only85.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only86 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only86.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only86.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only87 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only87.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only87.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only88 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only88.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only88.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only89 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only89.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only89.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only9 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only9.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only9.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only90 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only90.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only90.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only91 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only91.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only91.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only92 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only92.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only92.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only93 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only93.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only93.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only94 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only94.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only94.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only95 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only95.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only95.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only96 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only96.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only96.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only97 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only97.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only97.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only98 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only98.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only98.all0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only99 0.5 pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only99.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_06_24_SOX2_Fixated_DNA-sacCer3-CpG-TET.CG-only99.all0.BI_w10_a10_b10.reads.tsv