python ~/code/SAMstats.py L550-embryos_CC7_SSB01_rep1.2x36mers.Aiptasia_pallida-1.0.unique.bam SAMstats-L550-embryos_CC7_SSB01_rep1.2x36mers.Aiptasia_pallida-1.0.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L551-embryos_CC7_SSB01_rep2.2x36mers.Aiptasia_pallida-1.0.unique.bam SAMstats-L551-embryos_CC7_SSB01_rep2.2x36mers.Aiptasia_pallida-1.0.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L552-embryos_CC7_Apo_rep1.2x36mers.Aiptasia_pallida-1.0.unique.bam SAMstats-L552-embryos_CC7_Apo_rep1.2x36mers.Aiptasia_pallida-1.0.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L553-embryos_CC7_Apo_rep2.2x36mers.Aiptasia_pallida-1.0.unique.bam SAMstats-L553-embryos_CC7_Apo_rep2.2x36mers.Aiptasia_pallida-1.0.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L550-embryos_CC7_SSB01_rep1.2x36mers.Aiptasia_pallida-1.0.unique.dedup.bam SAMstats-L550-embryos_CC7_SSB01_rep1.2x36mers.Aiptasia_pallida-1.0.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L551-embryos_CC7_SSB01_rep2.2x36mers.Aiptasia_pallida-1.0.unique.dedup.bam SAMstats-L551-embryos_CC7_SSB01_rep2.2x36mers.Aiptasia_pallida-1.0.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L552-embryos_CC7_Apo_rep1.2x36mers.Aiptasia_pallida-1.0.unique.dedup.bam SAMstats-L552-embryos_CC7_Apo_rep1.2x36mers.Aiptasia_pallida-1.0.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &
python ~/code/SAMstats.py L553-embryos_CC7_Apo_rep2.2x36mers.Aiptasia_pallida-1.0.unique.dedup.bam SAMstats-L553-embryos_CC7_Apo_rep2.2x36mers.Aiptasia_pallida-1.0.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/aiptasia_genome.scaffolds.chrom.sizes ~/programs/samtools-0.1.18/samtools -paired &