Index of /kundaje/marinovg/oak/various/ENCODE4/Chromatin-nanopores/2019-05-29-GM12878-SMAC

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]BI.sh2019-05-31 11:51 766K 
[ ]GM12878-CTCF-human-ENCSR000AKB-optimal_idr.top5000.1kb-radius.bed2019-05-31 21:11 302K 
[ ]GM12878-CTCF-optimal_idr-hg38.narrowpeak.bed.gz2019-06-02 07:12 689K 
[ ]GM12878-DNAse-UW-Rep2-ENCFF273MVV.bed.gz2019-02-09 10:36 759K 
[ ]GM12878-DNAse-rep1-hg38.ENCFF598KWZ.bed.gz2019-02-09 10:07 549K 
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.CG-only2019-05-31 12:13 104  
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only2019-05-31 12:16 104  
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp2019-05-31 12:16 104  
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp2019-05-31 12:19 104  
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp2019-05-31 12:19 104  
[ ]NanoporeTSVMappingStats-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp2019-05-31 12:16 104  
[ ]NanoporeTSVMappingStats.files2019-05-31 12:41 774  
[ ]NanoporeTSVMappingStats.table2019-05-31 12:41 609  
[ ]hg19.refFlat-2012-10-22.no_haps.TSS-0bp.GM12878.FPKM-quintile1.bed2019-05-31 14:50 320K 
[ ]hg19.refFlat-2012-10-22.no_haps.TSS-0bp.GM12878.FPKM-quintile5.bed2019-05-31 14:50 144K 
[TXT]kmeans-all-sites-2019_05_29_GM12878_SMAC_SDS_HC.m6A-onlytmp.tsv2019-05-31 21:57 5.1M 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 14:55 9.9K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:03 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 16:00 9.9K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:12 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:59 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:13 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:55 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:16 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 15:54 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:16 10K 
[ ]signal-around-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:52 9.9K 
[ ]signal-around-DNAse-GM18278-WGBS-HAIB-rep1+rep2.minCov12019-06-01 11:06 10K 
[ ]signal-around-GM12878-CTCF-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:08 10K 
[ ]signal-around-GM12878-CTCF-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:04 10K 
[ ]signal-around-GM12878-CTCF-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:08 10K 
[ ]signal-around-GM12878-CTCF-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 09:52 10K 
[ ]signal-around-GM12878-CTCF-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:16 10K 
[ ]signal-around-GM12878-CTCF-ENCSR000AKB-GM18278-WGBS-HAIB-rep1+rep2.minCov12019-06-01 11:01 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 14:54 9.8K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:12 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 15:55 9.9K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:00 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:51 9.9K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:02 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.9K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:01 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 15:48 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:08 10K 
[ ]signal-around-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:52 9.9K 
[ ]signal-around-TSS-GM18278-WGBS-HAIB-rep1+rep2.minCov12019-06-01 11:03 10K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 14:52 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:01 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 15:52 9.7K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 09:54 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:51 9.7K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:02 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:44 9.7K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:03 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 16:06 9.7K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:00 9.8K 
[ ]signal-around-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:48 9.7K 
[ ]signal-around-TSS-quintile1-GM18278-WGBS-HAIB-rep1+rep2.minCov12019-06-01 10:59 9.9K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 14:52 9.5K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:07 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 15:47 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:01 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:46 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:10 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:41 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:06 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 15:47 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.BI_w10_a10_b10.cutoff_0.5.coverage.minCov12019-06-02 10:04 9.8K 
[ ]signal-around-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:51 9.8K 
[ ]signal-around-TSS-quintile5-GM18278-WGBS-HAIB-rep1+rep2.minCov12019-06-01 10:57 10K 
[ ]signal-around-hg38-DNAse-GM18278-WGBS-HAIB-rep1+rep2.CG-only-0-based.minCov102019-06-02 07:27 9.9K 
[ ]signal-around-hg38-DNAse-GM18278-WGBS-HAIB-rep1+rep2.CG-only-1-based.minCov102019-06-02 07:28 9.9K 
[ ]signal-around-hg38-GM12878-CTCF-GM18278-WGBS-HAIB-rep1+rep2.CG-only-0-based.minCov102019-06-02 07:27 9.8K 
[ ]signal-around-hg38-GM12878-CTCF-GM18278-WGBS-HAIB-rep1+rep2.CG-only-1-based.minCov102019-06-02 07:27 9.7K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 23:15 9.9K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 23:46 9.9K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-06-01 00:27 10K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-06-01 00:38 10K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-06-01 00:00 10K 
[ ]signal-around-tabix-DNAse-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-06-01 00:56 9.9K 
[ ]signal-around-tabix-DNAse-read_coverage2019-06-01 06:53 36K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 18:20 9.7K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 18:51 10K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 18:53 10K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 18:52 10K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 18:49 10K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 18:51 10K 
[ ]signal-around-tabix-GM12878-CTCF-ENCSR000AKB-read_coverage2019-06-01 06:53 36K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 17:00 9.8K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 17:19 9.9K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 17:19 9.9K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 17:18 9.9K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 17:17 10K 
[ ]signal-around-tabix-TSS-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 17:19 9.9K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 15:45 9.8K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.7K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.7K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.7K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.7K 
[ ]signal-around-tabix-TSS-quintile1-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:49 9.7K 
[ ]signal-around-tabix-TSS-quintile1-read_coverage2019-06-01 06:52 36K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.CG-only.cutoff_0.5.coverage.minCov12019-05-31 15:38 9.5K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-1bp.cutoff_0.5.coverage.minCov12019-05-31 15:40 9.8K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-2bp.cutoff_0.5.coverage.minCov12019-05-31 15:41 9.8K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-3bp.cutoff_0.5.coverage.minCov12019-05-31 15:40 9.8K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only-CG-excluded-4bp.cutoff_0.5.coverage.minCov12019-05-31 15:40 9.8K 
[ ]signal-around-tabix-TSS-quintile5-2019_05_29_GM12878_SMAC_SDS_HC.m6A-only.cutoff_0.5.coverage.minCov12019-05-31 15:40 9.8K 
[ ]signal-around-tabix-TSS-quintile5-read_coverage2019-06-01 06:52 36K 
[ ]signal-around-tabix-TSS-read_coverage2019-06-01 06:52 36K 
[ ]z2019-06-02 07:37 11K 
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