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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only18 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only19 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only2 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only20 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only21 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only22 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only23 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only24 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only25 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only26 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only27 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only28 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only29 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only3 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only30 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only31 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only32 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only33 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only34 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only35 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only36 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only37 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only38 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only39 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only4 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only40 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only41 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only42 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only43 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only44 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only45 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only46 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only47 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only48 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only49 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only5 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only50 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only51 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only52 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only53 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only54 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only55 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only56 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only57 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only58 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only59 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only6 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only60 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only61 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only62 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only63 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only64 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only65 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only66 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only67 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only68 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only69 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only7 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only70 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only71 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only72 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only73 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only74 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only75 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only76 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only77 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only78 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only79 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only8 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only80 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only81 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only82 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only83 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only84 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only85 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only86 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only87 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only88 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only89 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only9 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only90 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only91 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only92 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only93 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only94 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only95 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-HexynN3.m6A-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G0 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G1 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G10 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G100 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G101 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G102 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G103 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G104 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G105 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G106 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G107 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G108 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G109 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G11 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G110 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G111 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G112 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G113 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G114 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G115 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G116 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G117 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G118 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G119 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G12 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G99 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.generic-A-C-T-G99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only0 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only1 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only10 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only100 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only101 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only102 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only103 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only104 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only105 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only106 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only107 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only108 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only109 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only11 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only110 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only111 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only112 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only113 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only114 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only115 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only116 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only117 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only118 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only119 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only12 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only120 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only121 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only122 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only123 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only124 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only125 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only126 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only127 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only128 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only129 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only13 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only130 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only131 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only132 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only133 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only134 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only135 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only136 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only137 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only138 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only139 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only14 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only140 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only141 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only142 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only143 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only144 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only145 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only146 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only147 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only148 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only149 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only15 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only150 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only151 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only152 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only153 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only154 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only155 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only156 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only157 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only158 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only159 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only16 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only160 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only161 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only162 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only163 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only164 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only165 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only166 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only167 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only168 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only169 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only17 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only170 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only171 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only172 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only173 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only174 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only175 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only176 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only177 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only178 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only179 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only18 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only180 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only181 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only182 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only183 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only184 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only185 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only186 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only187 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only188 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only189 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only19 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only190 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only191 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only192 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only193 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only194 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only195 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only196 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only197 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only198 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only199 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only2 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only20 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only200 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only201 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only202 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only203 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only204 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only205 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only206 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only207 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only208 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only209 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only21 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only210 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only211 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only212 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only213 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only214 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only215 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only216 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only217 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only218 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only219 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only22 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only220 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only221 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only222 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only223 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only224 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only225 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only226 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only227 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only228 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only229 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only23 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only230 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only231 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only232 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only233 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only234 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only235 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only236 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only237 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only238 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only239 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only24 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only240 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only241 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only25 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only26 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only27 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only28 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only29 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only3 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only30 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only31 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only32 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only33 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only34 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only35 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only36 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only37 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only38 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only39 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only4 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only40 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only41 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only42 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only43 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only44 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only45 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only46 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only47 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only48 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only49 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only5 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only50 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only51 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only52 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only53 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only54 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only55 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only56 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only57 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only58 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only59 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only6 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only60 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only61 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only62 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only63 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only64 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only65 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only66 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only67 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only68 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only69 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only7 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only70 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only71 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only72 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only73 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only74 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only75 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only76 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only77 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only78 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only79 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only8 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only80 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only81 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only82 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only83 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only84 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only85 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only86 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only87 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only88 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only89 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only9 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only90 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only91 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only92 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only93 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only94 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only95 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only96 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only97 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only98 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only99 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-Naked.m6A-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G0 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G1 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G10 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G100 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G101 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G102 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G102.BI_w10_a10_b10.reads.tsv
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G104 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G105 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G106 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G107 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G108 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G109 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G11 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G110 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G111 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G112 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G113 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G114 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G115 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G116 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G117 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G118 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G119 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G12 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G120 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G121 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G122 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G122.BI_w10_a10_b10.reads.tsv
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G96 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G97 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G98 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G99 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.generic-A-C-T-G99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only0 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only1 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only10 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only100 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only101 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only102 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only103 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only104 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only105 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only106 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only107 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only108 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only109 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only11 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only110 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only111 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only112 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only113 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only114 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only115 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only116 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only117 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only118 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only119 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only12 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only120 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only121 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only122 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only123 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only124 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only125 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only126 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only127 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only128 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only129 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only13 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only130 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only131 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only132 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only133 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only134 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only135 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only136 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only137 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only138 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only139 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only14 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only140 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only141 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only142 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only143 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only144 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only145 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only146 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only147 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only148 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only149 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only15 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only150 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only151 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only152 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only153 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only154 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only155 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only156 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only157 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only158 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only159 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only16 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only160 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only161 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only162 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only163 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only164 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only165 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only166 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only167 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only168 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only169 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only17 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only170 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only171 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only172 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only173 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only174 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only175 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only176 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only177 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only178 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only179 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only18 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only180 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only181 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only182 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only183 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only184 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only185 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only186 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only187 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only188 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only188.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only188.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only189 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only189.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only189.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only19 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only190 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only190.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only190.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only191 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only191.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only191.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only192 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only192.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only192.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only193 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only193.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only193.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only194 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only194.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only194.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only195 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only195.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only195.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only196 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only196.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only196.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only197 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only197.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only197.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only198 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only198.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only198.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only199 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only199.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only199.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only2 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only20 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only200 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only200.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only200.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only201 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only201.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only201.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only202 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only202.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only202.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only203 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only203.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only203.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only204 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only204.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only204.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only205 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only205.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only205.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only206 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only206.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only206.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only207 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only207.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only207.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only208 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only208.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only208.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only209 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only209.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only209.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only21 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only210 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only210.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only210.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only211 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only211.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only211.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only212 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only212.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only212.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only213 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only213.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only213.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only214 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only214.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only214.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only215 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only215.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only215.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only216 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only216.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only216.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only217 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only217.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only217.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only218 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only218.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only218.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only219 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only219.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only219.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only22 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only220 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only220.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only220.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only221 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only221.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only221.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only222 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only222.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only222.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only223 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only223.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only223.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only224 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only224.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only224.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only225 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only225.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only225.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only226 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only226.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only226.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only227 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only227.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only227.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only228 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only228.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only228.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only229 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only229.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only229.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only23 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only230 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only230.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only230.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only231 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only231.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only231.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only232 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only232.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only232.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only233 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only233.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only233.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only234 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only234.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only234.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only235 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only235.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only235.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only236 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only236.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only236.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only237 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only237.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only237.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only238 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only238.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only238.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only239 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only239.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only239.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only24 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only240 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only240.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only240.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only241 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only241.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only241.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only242 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only242.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only242.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only243 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only243.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only243.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only244 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only244.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only244.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only245 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only245.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only245.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only246 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only246.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only246.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only247 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only247.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only247.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only248 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only248.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only248.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only249 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only249.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only249.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only25 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only250 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only250.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only250.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only251 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only251.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only251.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only252 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only252.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only252.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only253 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only253.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only253.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only254 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only254.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only254.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only255 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only255.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only255.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only256 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only256.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only256.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only257 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only257.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only257.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only258 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only258.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only258.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only259 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only259.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only259.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only26 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only260 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only260.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only260.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only261 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only261.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only261.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only262 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only262.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only262.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only263 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only263.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only263.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only264 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only264.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only264.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only265 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only265.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only265.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only266 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only266.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only266.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only267 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only267.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only267.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only268 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only268.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only268.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only269 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only269.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only269.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only27 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only270 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only270.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only270.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only271 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only271.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only271.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only272 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only272.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only272.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only273 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only273.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only273.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only274 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only274.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only274.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only275 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only275.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only275.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only276 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only276.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only276.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only277 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only277.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only277.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only278 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only278.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only278.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only279 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only279.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only279.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only28 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only280 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only280.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only280.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only281 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only281.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only281.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only282 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only282.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only282.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only283 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only283.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only283.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only284 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only284.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only284.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only285 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only285.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only285.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only286 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only286.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only286.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only287 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only287.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only287.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only288 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only288.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only288.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only289 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only289.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only289.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only29 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only290 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only290.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only290.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only291 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only291.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only291.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only292 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only292.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only292.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only293 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only293.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only293.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only294 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only294.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only294.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only295 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only295.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only295.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only296 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only296.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only296.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only297 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only297.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only297.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only298 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only298.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only298.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only299 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only299.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only299.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only3 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only30 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only300 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only300.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only300.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only301 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only301.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only301.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only302 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only302.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only302.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only303 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only303.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only303.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only304 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only304.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only304.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only305 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only305.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only305.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only306 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only306.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only306.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only307 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only307.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only307.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only308 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only308.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only308.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only309 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only309.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only309.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only31 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only310 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only310.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only310.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only311 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only311.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only311.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only312 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only312.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only312.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only313 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only313.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only313.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only314 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only314.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only314.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only315 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only315.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only315.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only316 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only316.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only316.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only317 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only317.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only317.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only318 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only318.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only318.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only319 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only319.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only319.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only32 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only320 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only320.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only320.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only321 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only321.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only321.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only322 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only322.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only322.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only323 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only323.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only323.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only324 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only324.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only324.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only325 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only325.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only325.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only326 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only326.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only326.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only327 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only327.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only327.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only328 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only328.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only328.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only329 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only329.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only329.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only33 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only330 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only330.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only330.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only331 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only331.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only331.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only332 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only332.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only332.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only333 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only333.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only333.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only334 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only334.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only334.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only335 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only335.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only335.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only336 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only336.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only336.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only337 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only337.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only337.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only338 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only338.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only338.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only339 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only339.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only339.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only34 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only340 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only340.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only340.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only341 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only341.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only341.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only342 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only342.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only342.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only343 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only343.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only343.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only344 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only344.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only344.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only345 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only345.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only345.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only346 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only346.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only346.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only347 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only347.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only347.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only348 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only348.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only348.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only349 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only349.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only349.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only35 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only350 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only350.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only350.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only351 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only351.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only351.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only352 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only352.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only352.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only353 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only353.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only353.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only354 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only354.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only354.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only355 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only355.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only355.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only356 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only356.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only356.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only357 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only357.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only357.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only358 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only358.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only358.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only359 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only359.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only359.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only36 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only360 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only360.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only360.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only361 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only361.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only361.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only362 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only362.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only362.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only363 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only363.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only363.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only364 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only364.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only364.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only365 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only365.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only365.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only366 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only366.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only366.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only367 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only367.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only367.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only368 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only368.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only368.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only369 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only369.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only369.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only37 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only370 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only370.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only370.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only371 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only371.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only371.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only372 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only372.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only372.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only373 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only373.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only373.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only374 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only374.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only374.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only375 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only375.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only375.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only376 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only376.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only376.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only377 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only377.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only377.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only378 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only378.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only378.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only379 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only379.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only379.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only38 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only380 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only380.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only380.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only381 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only381.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only381.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only382 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only382.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only382.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only383 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only383.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only383.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only384 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only384.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only384.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only385 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only385.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only385.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only386 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only386.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only386.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only387 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only387.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only387.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only388 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only388.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only388.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only389 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only389.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only389.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only39 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only390 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only390.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only390.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only391 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only391.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only391.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only392 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only392.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only392.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only393 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only393.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only393.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only394 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only394.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only394.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only395 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only395.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only395.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only396 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only396.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only396.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only397 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only397.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only397.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only398 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only398.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only398.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only399 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only399.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only399.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only4 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only40 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only400 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only400.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only400.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only401 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only401.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only401.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only402 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only402.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only402.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only403 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only403.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only403.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only404 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only404.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only404.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only405 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only405.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only405.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only406 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only406.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only406.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only407 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only407.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only407.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only408 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only408.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only408.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only409 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only409.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only409.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only41 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only410 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only410.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only410.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only411 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only411.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only411.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only412 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only412.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only412.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only413 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only413.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only413.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only414 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only414.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only414.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only415 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only415.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only415.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only416 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only416.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only416.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only417 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only417.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only417.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only418 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only418.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only418.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only419 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only419.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only419.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only42 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only420 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only420.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only420.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only421 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only421.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only421.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only422 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only422.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only422.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only423 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only423.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only423.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only424 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only424.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only424.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only425 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only425.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only425.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only426 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only426.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only426.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only427 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only427.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only427.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only428 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only428.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only428.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only429 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only429.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only429.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only43 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only430 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only430.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only430.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only431 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only431.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only431.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only432 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only432.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only432.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only433 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only433.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only433.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only434 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only434.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only434.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only435 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only435.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only435.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only436 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only436.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only436.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only437 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only437.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only437.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only438 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only438.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only438.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only439 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only439.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only439.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only44 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only440 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only440.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only440.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only441 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only441.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only441.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only442 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only442.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only442.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only443 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only443.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only443.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only444 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only444.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only444.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only445 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only445.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only445.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only446 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only446.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only446.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only447 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only447.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only447.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only448 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only448.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only448.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only449 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only449.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only449.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only45 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only450 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only450.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only450.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only451 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only451.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only451.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only452 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only452.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only452.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only453 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only453.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only453.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only454 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only454.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only454.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only455 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only455.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only455.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only456 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only456.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only456.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only457 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only457.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only457.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only458 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only458.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only458.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only459 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only459.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only459.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only46 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only460 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only460.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only460.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only461 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only461.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only461.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only462 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only462.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only462.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only463 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only463.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only463.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only464 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only464.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only464.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only465 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only465.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only465.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only466 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only466.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only466.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only467 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only467.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only467.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only468 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only468.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only468.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only469 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only469.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only469.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only47 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only470 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only470.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only470.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only471 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only471.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only471.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only472 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only472.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only472.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only473 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only473.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only473.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only474 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only474.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only474.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only475 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only475.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only475.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only476 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only476.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only476.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only477 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only477.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only477.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only478 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only478.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only478.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only479 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only479.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only479.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only48 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only480 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only480.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only480.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only481 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only481.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only481.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only482 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only482.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only482.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only483 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only483.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only483.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only484 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only484.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only484.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only485 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only485.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only485.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only486 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only486.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only486.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only487 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only487.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only487.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only488 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only488.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only488.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only489 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only489.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only489.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only49 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only490 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only490.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only490.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only491 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only491.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only491.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only492 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only492.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only492.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only493 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only493.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only493.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only494 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only494.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only494.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only495 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only495.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only495.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only496 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only496.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only496.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only497 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only497.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only497.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only498 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only498.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only498.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only499 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only499.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only499.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only5 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only50 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only500 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only500.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only500.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only501 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only501.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only501.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only502 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only502.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only502.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only503 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only503.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only503.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only504 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only504.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only504.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only505 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only505.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only505.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only506 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only506.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only506.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only507 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only507.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only507.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only508 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only508.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only508.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only509 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only509.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only509.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only51 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only510 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only510.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only510.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only511 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only511.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only511.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only512 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only512.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only512.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only513 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only513.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only513.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only514 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only514.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only514.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only515 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only515.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only515.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only516 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only516.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only516.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only517 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only517.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only517.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only518 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only518.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only518.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only519 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only519.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only519.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only52 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only520 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only520.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only520.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only521 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only521.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only521.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only522 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only522.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only522.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only523 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only523.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only523.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only524 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only524.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only524.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only525 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only525.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only525.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only526 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only526.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only526.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only527 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only527.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only527.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only528 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only528.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only528.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only529 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only529.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only529.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only53 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only530 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only530.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only530.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only531 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only531.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only531.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only532 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only532.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only532.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only533 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only533.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only533.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only534 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only534.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only534.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only535 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only535.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only535.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only536 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only536.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only536.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only537 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only537.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only537.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only538 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only538.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only538.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only539 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only539.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only539.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only54 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only540 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only540.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only540.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only541 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only541.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only541.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only542 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only542.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only542.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only543 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only543.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only543.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only544 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only544.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only544.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only545 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only545.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only545.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only546 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only546.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only546.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only547 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only547.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only547.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only548 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only548.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only548.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only549 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only549.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only549.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only55 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only550 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only550.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only550.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only551 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only551.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only551.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only552 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only552.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only552.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only553 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only553.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only553.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only554 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only554.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only554.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only555 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only555.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only555.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only556 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only556.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only556.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only557 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only557.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only557.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only558 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only558.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only558.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only559 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only559.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only559.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only56 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only560 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only560.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only560.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only561 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only561.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only561.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only562 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only562.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only562.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only563 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only563.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only563.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only564 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only564.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only564.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only565 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only565.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only565.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only566 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only566.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only566.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only567 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only567.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only567.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only568 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only568.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only568.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only569 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only569.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only569.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only57 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only570 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only570.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only570.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only571 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only571.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only571.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only572 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only572.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only572.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only573 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only573.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only573.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only574 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only574.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only574.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only575 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only575.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only575.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only576 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only576.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only576.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only577 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only577.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only577.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only578 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only578.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only578.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only579 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only579.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only579.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only58 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only580 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only580.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only580.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only581 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only581.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only581.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only582 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only582.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only582.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only583 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only583.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only583.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only584 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only584.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only584.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only585 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only585.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only585.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only586 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only586.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only586.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only587 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only587.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only587.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only588 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only588.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only588.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only589 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only589.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only589.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only59 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only590 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only590.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only590.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only591 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only591.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only591.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only592 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only592.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only592.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only593 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only593.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only593.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only594 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only594.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only594.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only595 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only595.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only595.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only596 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only596.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only596.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only597 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only597.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only597.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only598 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only598.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only598.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only599 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only599.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only599.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only6 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only60 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only600 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only600.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only600.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only601 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only601.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only601.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only602 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only602.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only602.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only603 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only603.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only603.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only604 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only604.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only604.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only605 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only605.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only605.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only606 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only606.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only606.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only607 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only607.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only607.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only608 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only608.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only608.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only609 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only609.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only609.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only61 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only610 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only610.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only610.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only611 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only611.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only611.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only612 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only612.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only612.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only613 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only613.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only613.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only614 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only614.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only614.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only615 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only615.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only615.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only616 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only616.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only616.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only617 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only617.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only617.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only618 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only618.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only618.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only619 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only619.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only619.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only62 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only620 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only620.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only620.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only621 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only621.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only621.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only622 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only622.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only622.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only623 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only623.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only623.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only63 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only64 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only65 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only66 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only67 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only68 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only69 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only7 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only70 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only71 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only72 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only73 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only74 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only75 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only76 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only77 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only78 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only79 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only8 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only80 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only81 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only82 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only83 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only84 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only85 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only86 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only87 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only88 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only89 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only9 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only90 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only91 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only92 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only93 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only94 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only95 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only96 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only97 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only98 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only99 0.5 pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_05_23_Barcoded_0_1_SDS-SAM.m6A-only99.BI_w10_a10_b10.reads.tsv