Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/07-S2-GSE101317/juicer-S2-pooled -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/07-S2-GSE101317/juicer-S2-pooled -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  519,234,646
 Normal Paired: 308,214,940 (59.36%)
 Chimeric Paired: 133,567,152 (25.72%)
 Chimeric Ambiguous: 69,731,085 (13.43%)
 Unmapped: 7,721,469 (1.49%)
 Ligation Motif Present: 336,290,366 (64.77%)
Alignable (Normal+Chimeric Paired): 441,782,092 (85.08%)
Unique Reads: 355,146,854 (68.40%)
PCR Duplicates: 86,635,238 (16.69%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 973,743,187
Intra-fragment Reads: 8,879,664 (1.71% / 2.50%)
Below MAPQ Threshold: 111,555,686 (21.48% / 31.41%)
Hi-C Contacts: 234,711,504 (45.20% / 66.09%)
 Ligation Motif Present: 110,686,181  (21.32% / 31.17%)
 3' Bias (Long Range): 54% - 46%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,629,563  (2.05% / 2.99%)
Intra-chromosomal: 224,081,941  (43.16% / 63.10%)
Short Range (<20Kb): 134,063,444  (25.82% / 37.75%)
Long Range (>20Kb): 90,003,374  (17.33% / 25.34%)