Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/07-S2-GSE101317/juicer-S2-pooled -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/07-S2-GSE101317/juicer-S2-pooled -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  519,234,646
 Normal Paired: 308,214,940 (59.36%)
 Chimeric Paired: 133,567,152 (25.72%)
 Chimeric Ambiguous: 69,731,085 (13.43%)
 Unmapped: 7,721,469 (1.49%)
 Ligation Motif Present: 336,290,366 (64.77%)
Alignable (Normal+Chimeric Paired): 441,782,092 (85.08%)
Unique Reads: 355,146,854 (68.40%)
PCR Duplicates: 86,635,238 (16.69%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 973,743,187
Intra-fragment Reads: 8,879,664 (1.71% / 2.50%)
Below MAPQ Threshold: 104,773,588 (20.18% / 29.50%)
Hi-C Contacts: 241,493,602 (46.51% / 68.00%)
 Ligation Motif Present: 113,468,999  (21.85% / 31.95%)
 3' Bias (Long Range): 54% - 46%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,720,312  (2.45% / 3.58%)
Intra-chromosomal: 228,773,290  (44.06% / 64.42%)
Short Range (<20Kb): 136,302,430  (26.25% / 38.38%)
Long Range (>20Kb): 92,455,491  (17.81% / 26.03%)