export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/01-Kc167-GSE85503/juicer-Kc167-GSE85503 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2019-04-06-Drosophila-Hi-C-data/01-Kc167-GSE85503/juicer-Kc167-GSE85503 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3//dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3//bwa-indexes/dm3.fa