python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only0 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only1 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only10 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only11 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only12 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only13 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only14 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only15 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only16 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only17 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only18 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only19 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only2 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only20 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only21 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only22 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only23 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only24 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only25 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only3 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only4 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only5 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only6 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only7 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only8 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only9 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.C-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G0 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G1 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G10 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G11 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G12 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G13 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G14 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G15 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G16 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G17 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G18 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G19 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G2 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G20 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G21 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G22 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G23 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G24 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G25 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G3 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G4 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G5 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G6 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G7 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G8 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G9 0.5 pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Buthyl.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynN2.C-only0 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynN2.C-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynN2.C-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynN2.generic-A-C-T-G0 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynN2.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynN2.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only0 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only1 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only2 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only3 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only4 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only5 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only6 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only7 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.C-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G0 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G1 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G2 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G3 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G4 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G5 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G6 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G7 0.5 pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-HexynNH2.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only0 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only1 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only10 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only11 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only12 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only13 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only14 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only15 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only16 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only17 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only18 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only2 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only3 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only4 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only5 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only6 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only7 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only8 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only9 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.C-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G0 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G1 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G10 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G11 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G12 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G13 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G14 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G15 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G16 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G17 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G18 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G2 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G3 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G4 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G5 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G6 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G7 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G8 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G9 0.5 pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_27_Kmno4-BcnI-Methyl.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv