python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only0 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only1 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only10 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only11 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only12 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only13 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only14 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only15 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only16 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only17 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only18 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only19 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only2 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only20 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only21 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only22 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only23 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only24 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only25 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only26 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only27 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only28 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only29 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only3 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only30 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only31 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only32 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only33 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only34 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only35 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only36 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only37 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only38 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only39 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only4 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only40 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only41 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only42 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only43 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only44 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only45 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only46 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only47 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only48 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only49 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only5 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only50 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only51 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only52 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only53 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only54 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only55 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only56 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only57 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only58 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only59 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only6 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only60 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only61 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only7 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only8 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only9 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G0 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G1 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G10 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G11 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G12 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G13 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G14 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G15 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G16 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G17 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G18 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G19 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G2 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G20 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G21 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G22 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G23 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G24 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G25 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G26 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G27 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G28 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G29 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G3 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G30 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G31 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G32 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G33 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G34 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G35 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G36 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G37 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G38 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G39 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G4 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G40 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G41 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G42 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G43 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G44 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G45 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G46 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G47 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G48 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G49 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G5 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G50 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G51 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G52 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G53 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G54 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G55 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G56 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G57 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G58 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G59 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G6 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G60 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G61 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G7 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G8 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G9 0.5 pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Butyl_4.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only0 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only1 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only10 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only100 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only101 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only102 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only103 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only104 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only105 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only106 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only107 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only108 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only109 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only11 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only110 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only111 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only112 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only113 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only114 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only115 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only116 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only117 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only118 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only119 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only12 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only120 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only121 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only122 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only123 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only124 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only125 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only126 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only127 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only13 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only14 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only15 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only16 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only17 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only18 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only19 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only2 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only20 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only21 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only22 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only23 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only24 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only25 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only26 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only27 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only28 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only29 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only3 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only30 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only31 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only32 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only33 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only34 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only35 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only36 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only37 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only38 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only39 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only4 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only40 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only41 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only42 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only43 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only44 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only45 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only46 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only47 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only48 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only49 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only5 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only50 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only51 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only52 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only53 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only54 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only55 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only56 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only57 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only58 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only59 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only6 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only60 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only61 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only62 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only63 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only64 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only65 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only66 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only67 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only68 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only69 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only7 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only70 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only71 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only72 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only73 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only74 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only75 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only76 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only77 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only78 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only79 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only8 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only80 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only81 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only82 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only83 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only84 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only85 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only86 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only87 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only88 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only89 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only9 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only90 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only91 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only92 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only93 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only94 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only95 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only96 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only97 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only98 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only99 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.CG-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G0 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G1 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G10 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G100 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G101 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G102 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G103 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G104 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G105 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G106 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G107 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G108 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G109 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G11 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G110 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G111 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G112 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G113 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G114 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G115 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G116 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G116.BI_w10_a10_b10.reads.tsv
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G95 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G95.BI_w10_a10_b10.reads.tsv
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G99 0.5 pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynN2_5.generic-A-C-T-G99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only0 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only1 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only10 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only100 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only101 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only102 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only103 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only104 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only105 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only106 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only107 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only108 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only109 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only11 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only110 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only111 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only112 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only113 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only114 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only115 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only116 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only117 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only118 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only119 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only12 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only120 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only121 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only122 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only123 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only124 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only125 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only126 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only127 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only128 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only129 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only13 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only130 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only131 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only132 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only133 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only134 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only135 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only136 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only137 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only138 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only139 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only14 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only140 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only141 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only142 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only143 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only144 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only145 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only146 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only147 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only148 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only149 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only15 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only150 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only151 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only152 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only153 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only154 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only155 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only156 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only157 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only158 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only159 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only16 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only160 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only161 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only162 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only163 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only164 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only165 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only166 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only167 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only168 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only169 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only17 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only170 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only171 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only172 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only173 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only174 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only175 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only176 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only177 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only178 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only179 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only18 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only180 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only181 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only182 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only183 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only184 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only185 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only186 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only187 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only19 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only2 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only20 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only21 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only22 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only23 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only24 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only25 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only26 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only27 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only28 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only29 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only3 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only30 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only31 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only32 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only33 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only34 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only35 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only36 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only37 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only38 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only39 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only4 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only40 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only41 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only42 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only43 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only44 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only45 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only46 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only47 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only48 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only49 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only5 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only50 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only51 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only52 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only53 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only54 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only55 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only56 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only57 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only58 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only59 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only6 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only60 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only61 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only62 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only63 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only64 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only65 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only66 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only67 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only68 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only69 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only7 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only70 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only71 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only72 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only73 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only74 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only75 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only76 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only77 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only78 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only79 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only8 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only80 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only81 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only82 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only83 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only84 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only85 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only86 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only87 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only88 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only89 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only9 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only90 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only91 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only92 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only93 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only94 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only95 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only96 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only97 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only98 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only99 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.CG-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G0 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G1 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G10 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G100 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G101 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G102 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G103 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G104 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G105 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G106 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G107 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G108 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G109 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G11 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G110 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G111 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G112 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G113 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G114 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G115 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G116 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G117 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G118 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G119 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G12 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G120 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G121 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G122 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G123 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G124 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G125 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G126 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G127 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G127.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G128 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G128.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G129 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G129.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G13 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G130 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G130.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G131 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G131.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G132 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G132.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G133 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G133.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G134 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G134.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G135 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G135.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G136 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G136.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G137 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G137.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G138 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G138.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G139 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G139.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G14 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G140 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G140.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G141 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G141.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G142 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G142.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G143 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G143.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G144 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G144.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G145 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G145.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G146 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G146.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G147 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G147.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G148 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G148.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G149 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G149.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G149.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G15 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G150 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G150.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G150.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G151 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G151.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G151.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G152 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G152.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G152.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G153 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G153.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G153.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G154 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G154.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G154.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G155 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G155.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G155.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G156 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G156.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G156.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G157 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G157.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G157.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G158 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G158.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G158.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G159 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G159.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G159.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G16 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G160 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G160.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G160.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G161 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G161.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G161.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G162 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G162.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G162.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G163 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G163.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G163.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G164 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G164.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G164.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G165 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G165.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G165.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G166 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G166.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G166.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G167 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G167.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G167.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G168 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G168.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G168.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G169 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G169.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G169.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G17 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G170 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G170.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G170.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G171 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G171.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G171.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G172 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G172.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G172.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G173 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G173.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G173.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G174 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G174.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G174.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G175 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G175.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G175.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G176 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G176.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G176.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G177 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G177.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G177.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G178 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G178.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G178.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G179 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G179.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G179.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G18 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G180 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G180.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G180.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G181 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G181.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G181.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G182 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G182.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G182.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G183 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G183.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G183.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G184 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G184.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G184.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G185 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G185.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G185.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G186 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G186.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G186.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G187 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G187.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G187.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G19 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G2 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G20 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G21 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G22 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G23 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G24 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G25 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G26 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G27 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G28 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G29 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G3 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G30 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G31 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G32 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G33 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G34 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G35 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G36 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G37 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G38 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G39 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G4 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G40 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G41 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G42 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G43 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G44 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G45 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G46 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G47 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G48 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G49 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G5 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G50 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G51 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G52 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G53 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G54 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G55 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G56 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G57 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G58 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G59 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G6 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G60 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G61 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G62 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G63 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G64 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G65 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G66 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G67 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G68 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G69 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G7 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G70 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G71 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G72 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G73 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G74 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G75 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G76 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G77 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G78 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G79 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G8 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G80 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G81 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G82 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G83 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G84 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G85 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G86 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G87 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G88 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G89 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G9 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G90 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G91 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G92 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G93 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G94 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G95 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G96 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G97 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G98 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G99 0.5 pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_HexynNH2_6.generic-A-C-T-G99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only0 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only1 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only10 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only100 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only101 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only102 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only103 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only104 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only105 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only106 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only107 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only108 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only109 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only11 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only110 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only111 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only112 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only113 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only114 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only115 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only116 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only117 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only118 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only119 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only12 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only120 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only121 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only122 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only123 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only124 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only125 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only126 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only13 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only14 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only15 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only16 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only17 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only18 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only19 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only2 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only20 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only21 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only22 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only23 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only24 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only25 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only26 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only27 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only28 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only29 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only3 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only30 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only31 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only32 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only33 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only34 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only35 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only36 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only37 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only38 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only39 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only4 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only40 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only41 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only42 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only43 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only44 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only45 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only46 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only47 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only48 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only49 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only5 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only50 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only51 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only52 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only53 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only54 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only55 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only56 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only57 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only58 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only59 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only6 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only60 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only61 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only62 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only63 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only64 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only65 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only66 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only67 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only68 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only69 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only7 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only70 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only71 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only72 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only73 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only74 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only75 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only76 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only77 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only78 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only79 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only8 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only80 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only81 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only82 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only83 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only84 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only85 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only86 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only87 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only88 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only89 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only9 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only90 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only91 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only92 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only93 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only94 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only95 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only96 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only97 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only98 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only99 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.CG-only99.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G0 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G1 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G10 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G100 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G100.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G101 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G101.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G102 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G102.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G103 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G103.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G104 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G104.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G105 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G105.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G106 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G106.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G107 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G107.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G108 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G108.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G109 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G109.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G11 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G110 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G110.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G111 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G111.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G112 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G112.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G113 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G113.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G114 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G114.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G115 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G115.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G116 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G116.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G117 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G117.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G118 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G118.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G119 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G119.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G12 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G120 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G120.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G121 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G121.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G122 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G122.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G123 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G123.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G124 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G124.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G125 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G125.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G126 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G126.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G13 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G14 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G15 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G16 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G17 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G18 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G19 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G2 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G20 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G21 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G22 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G23 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G23.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G24 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G24.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G25 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G25.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G26 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G26.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G27 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G27.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G28 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G28.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G29 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G29.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G3 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G30 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G30.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G31 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G31.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G32 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G32.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G33 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G33.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G34 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G34.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G35 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G35.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G36 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G36.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G37 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G37.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G38 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G38.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G39 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G39.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G4 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G40 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G40.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G41 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G41.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G42 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G42.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G43 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G43.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G44 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G44.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G45 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G45.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G46 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G46.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G47 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G47.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G48 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G48.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G49 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G49.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G5 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G50 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G50.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G51 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G51.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G52 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G52.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G53 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G53.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G54 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G54.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G55 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G55.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G56 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G56.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G57 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G57.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G58 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G58.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G59 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G59.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G6 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G60 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G60.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G61 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G61.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G62 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G62.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G63 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G63.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G64 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G64.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G65 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G65.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G66 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G66.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G67 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G67.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G68 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G68.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G69 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G69.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G7 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G70 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G70.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G71 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G71.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G72 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G72.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G73 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G73.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G74 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G74.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G75 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G75.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G76 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G76.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G77 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G77.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G78 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G78.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G79 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G79.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G8 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G80 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G80.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G81 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G81.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G82 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G82.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G83 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G83.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G84 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G84.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G85 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G85.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G86 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G86.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G87 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G87.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G88 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G88.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G89 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G89.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G9 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G90 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G90.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G91 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G91.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G92 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G92.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G93 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G93.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G94 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G94.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G95 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G95.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G96 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G96.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G97 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G97.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G98 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G98.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G99 0.5 pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_HhaI-HhaI_Meth_3.generic-A-C-T-G99.BI_w10_a10_b10.reads.tsv