python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all0 0.5 pieces-2019_01_29_saCer3_2nd.all0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all0.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all1 0.5 pieces-2019_01_29_saCer3_2nd.all1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all1.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all10 0.5 pieces-2019_01_29_saCer3_2nd.all10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all10.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all100 0.5 pieces-2019_01_29_saCer3_2nd.all100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all100.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all101 0.5 pieces-2019_01_29_saCer3_2nd.all101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all101.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all102 0.5 pieces-2019_01_29_saCer3_2nd.all102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all102.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all103 0.5 pieces-2019_01_29_saCer3_2nd.all103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all103.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all104 0.5 pieces-2019_01_29_saCer3_2nd.all104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all104.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all105 0.5 pieces-2019_01_29_saCer3_2nd.all105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all105.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all106 0.5 pieces-2019_01_29_saCer3_2nd.all106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all106.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all107 0.5 pieces-2019_01_29_saCer3_2nd.all107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all107.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all108 0.5 pieces-2019_01_29_saCer3_2nd.all108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all108.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all109 0.5 pieces-2019_01_29_saCer3_2nd.all109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all109.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all11 0.5 pieces-2019_01_29_saCer3_2nd.all11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all11.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all110 0.5 pieces-2019_01_29_saCer3_2nd.all110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all110.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all111 0.5 pieces-2019_01_29_saCer3_2nd.all111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all111.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all112 0.5 pieces-2019_01_29_saCer3_2nd.all112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all112.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all113 0.5 pieces-2019_01_29_saCer3_2nd.all113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all113.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all114 0.5 pieces-2019_01_29_saCer3_2nd.all114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all114.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all115 0.5 pieces-2019_01_29_saCer3_2nd.all115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all115.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all116 0.5 pieces-2019_01_29_saCer3_2nd.all116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all116.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all117 0.5 pieces-2019_01_29_saCer3_2nd.all117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all117.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all118 0.5 pieces-2019_01_29_saCer3_2nd.all118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all118.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all119 0.5 pieces-2019_01_29_saCer3_2nd.all119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all119.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all12 0.5 pieces-2019_01_29_saCer3_2nd.all12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all12.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all120 0.5 pieces-2019_01_29_saCer3_2nd.all120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all120.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all121 0.5 pieces-2019_01_29_saCer3_2nd.all121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all121.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all122 0.5 pieces-2019_01_29_saCer3_2nd.all122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all122.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all123 0.5 pieces-2019_01_29_saCer3_2nd.all123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all123.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all124 0.5 pieces-2019_01_29_saCer3_2nd.all124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all124.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all125 0.5 pieces-2019_01_29_saCer3_2nd.all125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all125.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all126 0.5 pieces-2019_01_29_saCer3_2nd.all126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all126.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all127 0.5 pieces-2019_01_29_saCer3_2nd.all127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all127.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all128 0.5 pieces-2019_01_29_saCer3_2nd.all128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all128.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all129 0.5 pieces-2019_01_29_saCer3_2nd.all129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all129.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all13 0.5 pieces-2019_01_29_saCer3_2nd.all13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all13.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all130 0.5 pieces-2019_01_29_saCer3_2nd.all130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all130.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all131 0.5 pieces-2019_01_29_saCer3_2nd.all131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all131.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all132 0.5 pieces-2019_01_29_saCer3_2nd.all132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all132.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all133 0.5 pieces-2019_01_29_saCer3_2nd.all133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all133.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all134 0.5 pieces-2019_01_29_saCer3_2nd.all134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all134.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all135 0.5 pieces-2019_01_29_saCer3_2nd.all135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all135.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all136 0.5 pieces-2019_01_29_saCer3_2nd.all136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all136.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all137 0.5 pieces-2019_01_29_saCer3_2nd.all137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all137.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all138 0.5 pieces-2019_01_29_saCer3_2nd.all138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all138.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all139 0.5 pieces-2019_01_29_saCer3_2nd.all139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all139.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all14 0.5 pieces-2019_01_29_saCer3_2nd.all14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all14.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all140 0.5 pieces-2019_01_29_saCer3_2nd.all140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all140.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all141 0.5 pieces-2019_01_29_saCer3_2nd.all141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all141.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all142 0.5 pieces-2019_01_29_saCer3_2nd.all142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all142.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all143 0.5 pieces-2019_01_29_saCer3_2nd.all143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all143.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all144 0.5 pieces-2019_01_29_saCer3_2nd.all144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all144.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all145 0.5 pieces-2019_01_29_saCer3_2nd.all145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all145.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all146 0.5 pieces-2019_01_29_saCer3_2nd.all146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all146.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all147 0.5 pieces-2019_01_29_saCer3_2nd.all147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all147.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all148 0.5 pieces-2019_01_29_saCer3_2nd.all148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all148.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all15 0.5 pieces-2019_01_29_saCer3_2nd.all15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all15.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all16 0.5 pieces-2019_01_29_saCer3_2nd.all16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all16.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all17 0.5 pieces-2019_01_29_saCer3_2nd.all17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all17.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all18 0.5 pieces-2019_01_29_saCer3_2nd.all18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all18.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all19 0.5 pieces-2019_01_29_saCer3_2nd.all19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all19.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all2 0.5 pieces-2019_01_29_saCer3_2nd.all2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all2.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all20 0.5 pieces-2019_01_29_saCer3_2nd.all20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all20.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all21 0.5 pieces-2019_01_29_saCer3_2nd.all21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all21.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all22 0.5 pieces-2019_01_29_saCer3_2nd.all22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all22.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all23 0.5 pieces-2019_01_29_saCer3_2nd.all23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all23.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all24 0.5 pieces-2019_01_29_saCer3_2nd.all24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all24.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all25 0.5 pieces-2019_01_29_saCer3_2nd.all25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all25.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all26 0.5 pieces-2019_01_29_saCer3_2nd.all26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all26.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all27 0.5 pieces-2019_01_29_saCer3_2nd.all27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all27.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all28 0.5 pieces-2019_01_29_saCer3_2nd.all28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all28.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all29 0.5 pieces-2019_01_29_saCer3_2nd.all29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all29.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all3 0.5 pieces-2019_01_29_saCer3_2nd.all3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all3.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all30 0.5 pieces-2019_01_29_saCer3_2nd.all30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all30.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all31 0.5 pieces-2019_01_29_saCer3_2nd.all31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all31.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all32 0.5 pieces-2019_01_29_saCer3_2nd.all32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all32.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all33 0.5 pieces-2019_01_29_saCer3_2nd.all33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all33.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all34 0.5 pieces-2019_01_29_saCer3_2nd.all34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all34.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all35 0.5 pieces-2019_01_29_saCer3_2nd.all35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all35.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all36 0.5 pieces-2019_01_29_saCer3_2nd.all36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all36.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all37 0.5 pieces-2019_01_29_saCer3_2nd.all37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all37.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all38 0.5 pieces-2019_01_29_saCer3_2nd.all38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all38.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all39 0.5 pieces-2019_01_29_saCer3_2nd.all39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all39.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all4 0.5 pieces-2019_01_29_saCer3_2nd.all4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all4.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all40 0.5 pieces-2019_01_29_saCer3_2nd.all40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all40.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all41 0.5 pieces-2019_01_29_saCer3_2nd.all41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all41.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all42 0.5 pieces-2019_01_29_saCer3_2nd.all42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all42.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all43 0.5 pieces-2019_01_29_saCer3_2nd.all43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all43.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all44 0.5 pieces-2019_01_29_saCer3_2nd.all44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all44.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all45 0.5 pieces-2019_01_29_saCer3_2nd.all45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all45.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all46 0.5 pieces-2019_01_29_saCer3_2nd.all46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all46.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all47 0.5 pieces-2019_01_29_saCer3_2nd.all47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all47.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all48 0.5 pieces-2019_01_29_saCer3_2nd.all48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all48.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all49 0.5 pieces-2019_01_29_saCer3_2nd.all49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all49.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all5 0.5 pieces-2019_01_29_saCer3_2nd.all5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all5.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all50 0.5 pieces-2019_01_29_saCer3_2nd.all50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all50.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all51 0.5 pieces-2019_01_29_saCer3_2nd.all51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all51.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all52 0.5 pieces-2019_01_29_saCer3_2nd.all52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all52.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all53 0.5 pieces-2019_01_29_saCer3_2nd.all53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all53.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all54 0.5 pieces-2019_01_29_saCer3_2nd.all54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all54.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all55 0.5 pieces-2019_01_29_saCer3_2nd.all55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all55.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all56 0.5 pieces-2019_01_29_saCer3_2nd.all56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all56.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all57 0.5 pieces-2019_01_29_saCer3_2nd.all57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all57.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all58 0.5 pieces-2019_01_29_saCer3_2nd.all58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all58.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all59 0.5 pieces-2019_01_29_saCer3_2nd.all59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all59.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all6 0.5 pieces-2019_01_29_saCer3_2nd.all6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all6.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all60 0.5 pieces-2019_01_29_saCer3_2nd.all60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all60.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all61 0.5 pieces-2019_01_29_saCer3_2nd.all61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all61.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all62 0.5 pieces-2019_01_29_saCer3_2nd.all62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all62.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all63 0.5 pieces-2019_01_29_saCer3_2nd.all63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all63.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all64 0.5 pieces-2019_01_29_saCer3_2nd.all64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all64.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all65 0.5 pieces-2019_01_29_saCer3_2nd.all65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all65.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all66 0.5 pieces-2019_01_29_saCer3_2nd.all66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all66.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all67 0.5 pieces-2019_01_29_saCer3_2nd.all67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all67.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all68 0.5 pieces-2019_01_29_saCer3_2nd.all68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all68.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all69 0.5 pieces-2019_01_29_saCer3_2nd.all69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all69.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all7 0.5 pieces-2019_01_29_saCer3_2nd.all7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all7.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all70 0.5 pieces-2019_01_29_saCer3_2nd.all70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all70.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all71 0.5 pieces-2019_01_29_saCer3_2nd.all71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all71.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all72 0.5 pieces-2019_01_29_saCer3_2nd.all72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all72.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all73 0.5 pieces-2019_01_29_saCer3_2nd.all73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all73.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all74 0.5 pieces-2019_01_29_saCer3_2nd.all74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all74.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all75 0.5 pieces-2019_01_29_saCer3_2nd.all75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all75.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all76 0.5 pieces-2019_01_29_saCer3_2nd.all76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all76.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all77 0.5 pieces-2019_01_29_saCer3_2nd.all77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all77.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all78 0.5 pieces-2019_01_29_saCer3_2nd.all78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all78.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all79 0.5 pieces-2019_01_29_saCer3_2nd.all79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all79.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all8 0.5 pieces-2019_01_29_saCer3_2nd.all8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all8.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all80 0.5 pieces-2019_01_29_saCer3_2nd.all80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all80.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all81 0.5 pieces-2019_01_29_saCer3_2nd.all81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all81.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all82 0.5 pieces-2019_01_29_saCer3_2nd.all82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all82.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all83 0.5 pieces-2019_01_29_saCer3_2nd.all83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all83.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all84 0.5 pieces-2019_01_29_saCer3_2nd.all84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all84.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all85 0.5 pieces-2019_01_29_saCer3_2nd.all85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all85.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all86 0.5 pieces-2019_01_29_saCer3_2nd.all86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all86.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all87 0.5 pieces-2019_01_29_saCer3_2nd.all87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all87.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all88 0.5 pieces-2019_01_29_saCer3_2nd.all88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all88.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all89 0.5 pieces-2019_01_29_saCer3_2nd.all89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all89.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all9 0.5 pieces-2019_01_29_saCer3_2nd.all9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all9.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all90 0.5 pieces-2019_01_29_saCer3_2nd.all90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all90.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all91 0.5 pieces-2019_01_29_saCer3_2nd.all91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all91.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all92 0.5 pieces-2019_01_29_saCer3_2nd.all92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all92.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all93 0.5 pieces-2019_01_29_saCer3_2nd.all93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all93.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all94 0.5 pieces-2019_01_29_saCer3_2nd.all94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all94.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all95 0.5 pieces-2019_01_29_saCer3_2nd.all95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all95.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all96 0.5 pieces-2019_01_29_saCer3_2nd.all96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all96.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all97 0.5 pieces-2019_01_29_saCer3_2nd.all97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all97.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all98 0.5 pieces-2019_01_29_saCer3_2nd.all98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all98.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.all99 0.5 pieces-2019_01_29_saCer3_2nd.all99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.all99.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only0 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only0.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only1 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only1.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only10 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only10.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only100 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only100.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only100.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only101 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only101.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only101.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only102 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only102.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only102.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only103 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only103.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only103.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only104 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only104.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only104.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only105 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only105.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only105.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only106 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only106.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only106.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only107 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only107.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only107.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only108 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only108.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only108.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only109 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only109.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only109.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only11 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only11.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only110 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only110.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only110.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only111 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only111.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only111.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only112 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only112.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only112.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only113 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only113.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only113.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only114 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only114.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only114.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only115 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only115.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only115.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only116 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only116.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only116.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only117 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only117.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only117.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only118 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only118.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only118.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only119 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only119.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only119.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only12 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only12.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only120 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only120.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only120.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only121 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only121.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only121.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only122 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only122.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only122.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only123 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only123.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only123.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only124 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only124.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only124.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only125 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only125.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only125.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only126 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only126.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only126.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only127 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only127.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only127.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only128 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only128.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only128.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only129 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only129.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only129.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only13 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only13.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only130 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only130.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only130.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only131 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only131.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only131.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only132 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only132.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only132.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only133 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only133.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only133.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only134 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only134.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only134.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only135 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only135.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only135.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only136 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only136.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only136.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only137 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only137.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only137.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only138 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only138.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only138.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only139 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only139.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only139.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only14 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only14.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only140 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only140.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only140.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only141 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only141.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only141.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only142 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only142.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only142.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only143 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only143.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only143.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only144 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only144.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only144.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only145 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only145.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only145.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only146 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only146.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only146.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only147 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only147.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only147.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only148 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only148.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only148.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only15 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only15.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only16 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only16.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only17 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only17.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only18 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only18.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only19 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only19.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only2 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only2.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only20 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only20.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only21 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only21.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only22 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only22.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only23 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only23.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only23.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only24 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only24.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only24.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only25 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only25.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only25.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only26 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only26.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only26.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only27 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only27.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only27.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only28 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only28.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only28.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only29 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only29.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only29.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only3 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only3.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only30 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only30.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only30.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only31 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only31.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only31.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only32 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only32.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only32.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only33 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only33.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only33.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only34 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only34.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only34.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only35 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only35.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only35.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only36 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only36.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only36.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only37 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only37.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only37.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only38 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only38.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only38.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only39 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only39.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only39.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only4 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only4.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only40 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only40.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only40.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only41 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only41.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only41.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only42 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only42.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only42.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only43 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only43.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only43.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only44 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only44.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only44.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only45 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only45.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only45.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only46 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only46.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only46.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only47 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only47.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only47.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only48 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only48.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only48.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only49 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only49.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only49.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only5 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only5.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only50 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only50.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only50.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only51 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only51.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only51.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only52 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only52.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only52.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only53 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only53.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only53.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only54 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only54.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only54.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only55 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only55.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only55.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only56 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only56.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only56.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only57 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only57.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only57.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only58 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only58.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only58.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only59 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only59.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only59.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only6 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only6.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only60 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only60.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only60.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only61 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only61.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only61.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only62 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only62.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only62.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only63 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only63.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only63.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only64 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only64.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only64.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only65 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only65.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only65.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only66 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only66.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only66.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only67 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only67.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only67.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only68 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only68.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only68.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only69 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only69.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only69.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only7 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only7.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only70 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only70.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only70.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only71 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only71.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only71.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only72 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only72.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only72.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only73 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only73.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only73.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only74 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only74.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only74.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only75 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only75.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only75.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only76 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only76.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only76.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only77 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only77.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only77.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only78 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only78.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only78.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only79 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only79.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only79.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only8 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only8.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only80 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only80.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only80.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only81 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only81.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only81.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only82 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only82.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only82.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only83 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only83.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only83.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only84 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only84.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only84.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only85 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only85.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only85.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only86 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only86.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only86.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only87 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only87.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only87.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only88 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only88.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only88.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only89 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only89.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only89.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only9 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only9.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only90 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only90.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only90.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only91 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only91.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only91.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only92 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only92.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only92.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only93 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only93.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only93.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only94 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only94.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only94.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only95 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only95.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only95.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only96 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only96.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only96.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only97 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only97.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only97.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only98 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only98.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only98.BI_w10_a10_b10.reads.tsv &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only99 0.5 pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only99.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_01_29_saCer3_2nd.m6A-GC-CG-only99.BI_w10_a10_b10.reads.tsv &