============================================== 2018-09-13 15:34:48 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Et-lim_rep1-GSM2355634/all.1x25mers.unique.bam --out Ino2p_Et-lim_rep1-GSM2355634/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 222109 HitCounts: 6507800.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 33 reads. The genome is segmented into 13556 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:34:57 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Et-lim_rep2-GSM2355635/all.1x25mers.unique.bam --out Ino2p_Et-lim_rep2-GSM2355635/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 72939 HitCounts: 6447954.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. The genome is segmented into 2689 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:34:59 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Ox_Glu-lim_rep2-GSM2355653/all.1x25mers.unique.bam --out Hap1p_Ox_Glu-lim_rep2-GSM2355653/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:34:59 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Et-lim_rep1-GSM2355650/all.1x25mers.unique.bam --out Hap1p_Et-lim_rep1-GSM2355650/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 219801 HitCounts: 9904500.0 Original read count stats: _IP Bases: 18783 HitCounts: 7269243.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 24 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 824 regions for analysis. Running with 1 threads ... The genome is segmented into 20507 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:02 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Glu-lim_rep2-GSM2355655/all.1x25mers.unique.bam --out Hap1p_Glu-lim_rep2-GSM2355655/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:02 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Glu-lim_rep1-GSM2355638/all.1x25mers.unique.bam --out Ino2p_Glu-lim_rep1-GSM2355638/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 102675 HitCounts: 1.0213222E7 Original read count stats: _IP Bases: 186008 HitCounts: 7982548.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 19 reads. The genome is segmented into 5986 regions for analysis. Running with 1 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 26 reads. ============================================== 2018-09-13 15:35:04 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Et-lim_rep2-GSM2355651/all.1x25mers.unique.bam --out Hap1p_Et-lim_rep2-GSM2355651/all.1x25mers.unique.GPS The genome is segmented into 13788 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 58412 HitCounts: 8748750.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. The genome is segmented into 2213 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:05 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Et-lim_rep2-GSM2355643/all.1x25mers.unique.bam --out Ino4p_Et-lim_rep2-GSM2355643/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:06 Original read count stats: _IP Bases: 12050 HitCounts: 5773333.0 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_N-lim_rep1-GSM2355648/all.1x25mers.unique.bam --out Hap1p_N-lim_rep1-GSM2355648/all.1x25mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads. The genome is segmented into 188 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 72456 HitCounts: 9078754.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 9 reads. The genome is segmented into 6806 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:11 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Glu-lim_rep1-GSM2355654/all.1x25mers.unique.bam --out Hap1p_Glu-lim_rep1-GSM2355654/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:11 ============================================== 2018-09-13 15:35:11 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_N-lim_rep2-GSM2355649/all.1x25mers.unique.bam --out Hap1p_N-lim_rep2-GSM2355649/all.1x25mers.unique.GPS Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hap1p_Ox_Glu-lim_rep1-GSM2355652/all.1x25mers.unique.bam --out Hap1p_Ox_Glu-lim_rep1-GSM2355652/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:12 Original read count stats: _IP Bases: 164900 HitCounts: 9903967.0 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Glu-lim_rep1-GSM2355646/all.1x25mers.unique.bam --out Ino4p_Glu-lim_rep1-GSM2355646/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 46846 HitCounts: 1.1112862E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 2812 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 261579 HitCounts: 1.1058063E7 Original read count stats: _IP Bases: 177007 HitCounts: 8680192.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 25 reads. ============================================== 2018-09-13 15:35:13 At Poisson p-value 1.0e-03, in a 301bp window, expect 27 reads. Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Glu-lim_rep2-GSM2355647/all.1x25mers.unique.bam --out Ino4p_Glu-lim_rep2-GSM2355647/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:13 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_N-lim_rep2-GSM2355641/all.1x25mers.unique.bam --out Ino4p_N-lim_rep2-GSM2355641/all.1x25mers.unique.GPS The genome is segmented into 14392 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:14 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_N-lim_rep1-GSM2355632/all.1x25mers.unique.bam --out Ino2p_N-lim_rep1-GSM2355632/all.1x25mers.unique.GPS The genome is segmented into 21154 regions for analysis. At Poisson p-value 1.0e-03, in a 301bp window, expect 41 reads. Original read count stats: Running with 1 threads ... _IP Bases: 43246 HitCounts: 8647271.0 The genome is segmented into 7277 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 80977 HitCounts: 8371700.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. ============================================== 2018-09-13 15:35:14 The genome is segmented into 760 regions for analysis. At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. Running with 1 threads ... Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Et-lim_rep1-GSM2355642/all.1x25mers.unique.bam --out Ino4p_Et-lim_rep1-GSM2355642/all.1x25mers.unique.GPS The genome is segmented into 6943 regions for analysis. Original read count stats: _IP Bases: 195126 HitCounts: 7166724.0 Running with 1 threads ... Original read count stats: _IP Bases: 16451 HitCounts: 7361478.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. The genome is segmented into 276 regions for analysis. Running with 1 threads ... The genome is segmented into 20226 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:15 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Et-lim_rep1-GSM2355658/all.1x25mers.unique.bam --out Oaf1p_Et-lim_rep1-GSM2355658/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:16 Original read count stats: _IP Bases: 65042 HitCounts: 6732151.0 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Ox_Glu-lim_rep1-GSM2355636/all.1x25mers.unique.bam --out Ino2p_Ox_Glu-lim_rep1-GSM2355636/all.1x25mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 10 reads. The genome is segmented into 3822 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 120003 HitCounts: 6713896.0 --------------------------- Events discovered Significant: 168 Insignificant: 12 Filtered: 11 Finish binding event prediction: 16.1s ============================================== 2018-09-13 15:35:17Refine read distribution from 64 binding events. Running with 1 threads ... Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Glu-lim_rep2-GSM2355639/all.1x25mers.unique.bam --out Ino2p_Glu-lim_rep2-GSM2355639/all.1x25mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. The genome is segmented into 12968 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 52732 HitCounts: 7103239.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. The genome is segmented into 1655 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:19 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_Ox_Glu-lim_rep2-GSM2355637/all.1x25mers.unique.bam --out Ino2p_Ox_Glu-lim_rep2-GSM2355637/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:19 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino2p_N-lim_rep2-GSM2355633/all.1x25mers.unique.bam --out Ino2p_N-lim_rep2-GSM2355633/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 103013 HitCounts: 7750781.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. Original read count stats: _IP Bases: 174498 HitCounts: 8105880.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 16 reads. The genome is segmented into 11407 regions for analysis. ============================================== 2018-09-13 15:35:21 Running with 1 threads ... Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Ox_Glu-lim_rep1-GSM2355644/all.1x25mers.unique.bam --out Ino4p_Ox_Glu-lim_rep1-GSM2355644/all.1x25mers.unique.GPS The genome is segmented into 19458 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 260210 HitCounts: 9389939.0 ============================================== 2018-09-13 15:35:22 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_N-lim_rep1-GSM2355640/all.1x25mers.unique.bam --out Ino4p_N-lim_rep1-GSM2355640/all.1x25mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 31 reads. ============================================== 2018-09-13 15:35:23 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Et-lim_rep2-GSM2590618/all.1x25mers.unique.bam --out Pip2p_Et-lim_rep2-GSM2590618/all.1x25mers.unique.GPS The genome is segmented into 20827 regions for analysis. Original read count stats: _IP Bases: 157267 HitCounts: 1.0141423E7 Running with 1 threads ... --------------------------- Events discovered Significant: 109 Insignificant: 122 Filtered: 0 Finish binding event prediction: 6.0s Refine read distribution from 51 binding events. ============================================== 2018-09-13 15:35:23 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Et-lim_rep1-GSM2590617/all.1x25mers.unique.bam --out Pip2p_Et-lim_rep1-GSM2590617/all.1x25mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 18 reads. Original read count stats: _IP Bases: 41676 HitCounts: 4896673.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 6 reads. The genome is segmented into 2628 regions for analysis. Running with 1 threads ... The genome is segmented into 17083 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 47944 HitCounts: 5040547.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 3115 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:27 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Ox_Glu-lim_rep1-GSM2355660/all.1x25mers.unique.bam --out Oaf1p_Ox_Glu-lim_rep1-GSM2355660/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 276848 HitCounts: 6163415.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 25 reads. ============================================== 2018-09-13 15:35:28 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Glu-lim_rep1-GSM2355662/all.1x25mers.unique.bam --out Oaf1p_Glu-lim_rep1-GSM2355662/all.1x25mers.unique.GPS The genome is segmented into 21170 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 40218 HitCounts: 6550338.0 ============================================== 2018-09-13 15:35:29 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_N-lim_rep1-GSM2590615/all.1x25mers.unique.bam --out Pip2p_N-lim_rep1-GSM2590615/all.1x25mers.unique.GPS The genome is segmented into 1643 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 124 Insignificant: 3 Filtered: 7 Finish binding event prediction: 23.1s Refine read distribution from 46 binding events. Running with 1 threads ... Original read count stats: _IP Bases: 48324 HitCounts: 5988197.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 3158 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:30 ============================================== 2018-09-13 15:35:30 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_N-lim_rep2-GSM2590616/all.1x25mers.unique.bam --out Pip2p_N-lim_rep2-GSM2590616/all.1x25mers.unique.GPS Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Glu-lim_rep2-GSM2355663/all.1x25mers.unique.bam --out Oaf1p_Glu-lim_rep2-GSM2355663/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 19659 HitCounts: 8017360.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. The genome is segmented into 619 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 52855 HitCounts: 6856028.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 4182 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:32 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Et-lim_rep2-GSM2355659/all.1x25mers.unique.bam --out Oaf1p_Et-lim_rep2-GSM2355659/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 8468 HitCounts: 7352509.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 396 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:34 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Glu-lim_rep1-GSM2590621/all.1x25mers.unique.bam --out Pip2p_Glu-lim_rep1-GSM2590621/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:34 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_N-lim_rep1-GSM2355656/all.1x25mers.unique.bam --out Oaf1p_N-lim_rep1-GSM2355656/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 80640 HitCounts: 8483101.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 10 reads. Original read count stats: _IP Bases: 177318 HitCounts: 7396947.0 The genome is segmented into 8540 regions for analysis. Running with 1 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. The genome is segmented into 18906 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:36 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_N-lim_rep2-GSM2355657/all.1x25mers.unique.bam --out Oaf1p_N-lim_rep2-GSM2355657/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 127079 HitCounts: 8322797.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. --------------------------- Events discovered Significant: 116 Insignificant: 8 Filtered: 7 Finish binding event prediction: 5.0s Refine read distribution from 86 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 75 Insignificant: 3 Filtered: 3 Finish binding event prediction: 25.1s The genome is segmented into 14960 regions for analysis. Refine read distribution from 37 binding events. Running with 1 threads ... Running with 1 threads ... ============================================== 2018-09-13 15:35:39 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Oaf1p_Ox_Glu-lim_rep2-GSM2355661/all.1x25mers.unique.bam --out Oaf1p_Ox_Glu-lim_rep2-GSM2355661/all.1x25mers.unique.GPS --------------------------- Events discovered Significant: 62 Insignificant: 146 Filtered: 1 Finish binding event prediction: 2.0s Refine read distribution from 46 binding events. Original read count stats: _IP Bases: 194513 HitCounts: 9682696.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 19 reads. The genome is segmented into 20229 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 159 Insignificant: 2 Filtered: 10 Finish binding event prediction: 10.1s Refine read distribution from 65 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 111 Insignificant: 3 Filtered: 5 Finish binding event prediction: 14.1s Refine read distribution from 59 binding events. ============================================== 2018-09-13 15:35:44 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Glu-lim_rep2-GSM2590622/all.1x25mers.unique.bam --out Pip2p_Glu-lim_rep2-GSM2590622/all.1x25mers.unique.GPS ============================================== 2018-09-13 15:35:44 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Ino4p_Ox_Glu-lim_rep2-GSM2355645/all.1x25mers.unique.bam --out Ino4p_Ox_Glu-lim_rep2-GSM2355645/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 102073 HitCounts: 1.1333202E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. The genome is segmented into 12056 regions for analysis. Running with 1 threads ... Original read count stats: _IP Bases: 691499 HitCounts: 2.1114203E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 96 reads. The genome is segmented into 21253 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 138 Insignificant: 14 Filtered: 2 Finish binding event prediction: 8.0s Refine read distribution from 90 binding events. --------------------------- Events discovered Significant: 67 Insignificant: 1 Filtered: 4 Finish binding event prediction: 27.1s Refine read distribution from 33 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 70 Insignificant: 1 Filtered: 4 Finish binding event prediction: 46.1s Refine read distribution from 30 binding events. Running with 1 threads ... ============================================== 2018-09-13 15:35:54 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Ox_Glu-lim_rep2-GSM2590620/all.1x25mers.unique.bam --out Pip2p_Ox_Glu-lim_rep2-GSM2590620/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 101257 HitCounts: 9816676.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. The genome is segmented into 12823 regions for analysis. Running with 1 threads ... ============================================== 2018-09-13 15:35:56 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Pip2p_Ox_Glu-lim_rep1-GSM2590619/all.1x25mers.unique.bam --out Pip2p_Ox_Glu-lim_rep1-GSM2590619/all.1x25mers.unique.GPS Original read count stats: _IP Bases: 99416 HitCounts: 9311826.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. The genome is segmented into 12617 regions for analysis. Running with 1 threads ... --------------------------- Events discovered Significant: 77 Insignificant: 17 Filtered: 0 Finish binding event prediction: 20.1s Refine read distribution from 54 binding events. --------------------------- Events discovered Significant: 62 Insignificant: 31 Filtered: 0 Finish binding event prediction: 8.1s Refine read distribution from 39 binding events. --------------------------- Events discovered Significant: 66 Insignificant: 16 Filtered: 3 Finish binding event prediction: 7.3s Refine read distribution from 43 binding events. --------------------------- Events discovered Significant: 38 Insignificant: 1 Filtered: 0 Finish binding event prediction: 31.1s Refine read distribution from 15 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 198 Insignificant: 0 Filtered: 7 Finish binding event prediction: 35.1s Refine read distribution from 53 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 217 Insignificant: 3 Filtered: 11 Finish binding event prediction: 51.1s Refine read distribution from 68 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 76 Insignificant: 0 Filtered: 1 Finish binding event prediction: 43.2s Refine read distribution from 30 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 26 Insignificant: 0 Filtered: 0 Finish binding event prediction: 38.1s Refine read distribution from 12 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 147 Insignificant: 11 Filtered: 0 Finish binding event prediction: 12.1s Refine read distribution from 84 binding events. --------------------------- Events discovered Significant: 175 Insignificant: 3 Filtered: 6 Finish binding event prediction: 1.0m Refine read distribution from 53 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 261 Insignificant: 0 Filtered: 7 Finish binding event prediction: 1.1m Refine read distribution from 63 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 79 Insignificant: 2 Filtered: 8 Finish binding event prediction: 45.2s Refine read distribution from 27 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 28 Insignificant: 1 Filtered: 2 Finish binding event prediction: 32.1s Refine read distribution from 13 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 24 Insignificant: 23 Filtered: 1 Finish binding event prediction: 26.0s Refine read distribution from 13 binding events. --------------------------- Events discovered Significant: 198 Insignificant: 0 Filtered: 8 Finish binding event prediction: 49.2s Refine read distribution from 43 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 26 Insignificant: 0 Filtered: 3 Finish binding event prediction: 33.1s Refine read distribution from 15 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 189 Insignificant: 5 Filtered: 3 Finish binding event prediction: 24.2s Refine read distribution from 98 binding events. --------------------------- Events discovered Significant: 24 Insignificant: 10 Filtered: 0 Finish binding event prediction: 23.1s Refine read distribution from 13 binding events. --------------------------- Events discovered Significant: 64 Insignificant: 13 Filtered: 1 Finish binding event prediction: 25.6s Refine read distribution from 45 binding events. --------------------------- Events discovered Significant: 35 Insignificant: 6 Filtered: 0 Finish binding event prediction: 7.0s Refine read distribution from 25 binding events. --------------------------- Events discovered Significant: 23 Insignificant: 4 Filtered: 1 Finish binding event prediction: 5.1s Refine read distribution from 19 binding events. --------------------------- Events discovered Significant: 216 Insignificant: 3 Filtered: 9 Finish binding event prediction: 1.3m Refine read distribution from 94 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 361 Insignificant: 0 Filtered: 16 Finish binding event prediction: 1.6m Refine read distribution from 76 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 343 Insignificant: 5 Filtered: 12 Finish binding event prediction: 1.6m Refine read distribution from 71 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 363 Insignificant: 5 Filtered: 15 Finish binding event prediction: 1.4m Refine read distribution from 112 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 126 Insignificant: 9 Filtered: 2 Finish binding event prediction: 32.0s Refine read distribution from 78 binding events. --------------------------- Events discovered Significant: 263 Insignificant: 4 Filtered: 6 Finish binding event prediction: 1.4m Refine read distribution from 90 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 223 Insignificant: 3 Filtered: 1 Finish binding event prediction: 30.0s Refine read distribution from 122 binding events. --------------------------- Events discovered Significant: 199 Insignificant: 0 Filtered: 4 Finish binding event prediction: 1.2m Refine read distribution from 56 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 149 Insignificant: 1 Filtered: 2 Finish binding event prediction: 1.5m Refine read distribution from 54 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 74 Insignificant: 3 Filtered: 0 Finish binding event prediction: 34.1s Refine read distribution from 45 binding events. --------------------------- Events discovered Significant: 122 Insignificant: 0 Filtered: 5 Finish binding event prediction: 1.2m Refine read distribution from 36 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 146 Insignificant: 7 Filtered: 0 Finish binding event prediction: 29.1s Refine read distribution from 82 binding events. --------------------------- Events discovered Significant: 214 Insignificant: 19 Filtered: 3 Finish binding event prediction: 37.1s Refine read distribution from 135 binding events. --------------------------- Events discovered Significant: 339 Insignificant: 2 Filtered: 15 Finish binding event prediction: 1.8m Refine read distribution from 74 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 530 Insignificant: 5 Filtered: 28 Finish binding event prediction: 2.3m Refine read distribution from 148 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 99 Insignificant: 7 Filtered: 2 Finish binding event prediction: 25.1s Refine read distribution from 75 binding events. --------------------------- Events discovered Significant: 191 Insignificant: 1 Filtered: 2 --------------------------- Events discovered Significant: 554 Insignificant: 2 Filtered: 13 Finish binding event prediction: 2.2m Refine read distribution from 88 binding events. Running with 1 threads ... Finish binding event prediction: 2.1m Refine read distribution from 86 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 566 Insignificant: 1 Filtered: 16 Finish binding event prediction: 2.0m Refine read distribution from 164 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 293 Insignificant: 21 Filtered: 2 Finish binding event prediction: 46.1s Refine read distribution from 164 binding events. --------------------------- Events discovered Significant: 156 Insignificant: 3 Filtered: 0 Finish binding event prediction: 1.8m Refine read distribution from 45 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 411 Insignificant: 2 Filtered: 17 Finish binding event prediction: 2.5m Refine read distribution from 80 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 167 Insignificant: 21 Filtered: 0 Finish binding event prediction: 47.1s Refine read distribution from 95 binding events. --------------------------- Events discovered Significant: 821 Insignificant: 2 Filtered: 28 Finish binding event prediction: 2.6m Refine read distribution from 231 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 194 Insignificant: 23 Filtered: 0 Finish binding event prediction: 53.1s Refine read distribution from 111 binding events. --------------------------- Events discovered Significant: 326 Insignificant: 25 Filtered: 1 Finish binding event prediction: 1.1m Refine read distribution from 160 binding events. --------------------------- Events discovered Significant: 249 Insignificant: 25 Filtered: 5 Finish binding event prediction: 41.1s Refine read distribution from 135 binding events. --------------------------- Events discovered Significant: 460 Insignificant: 41 Filtered: 6 Finish binding event prediction: 34.2s Refine read distribution from 279 binding events. --------------------------- Events discovered Significant: 266 Insignificant: 23 Filtered: 1 Finish binding event prediction: 1.4m Refine read distribution from 128 binding events. --------------------------- Events discovered Significant: 460 Insignificant: 42 Filtered: 2 Finish binding event prediction: 46.1s Refine read distribution from 229 binding events. --------------------------- Events discovered Significant: 121 Insignificant: 14 Filtered: 0 Finish binding event prediction: 35.1s Refine read distribution from 74 binding events. --------------------------- Events discovered Significant: 350 Insignificant: 10 Filtered: 11 Finish binding event prediction: 2.9m Refine read distribution from 107 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 903 Insignificant: 10 Filtered: 56 Finish binding event prediction: 3.0m Refine read distribution from 198 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 131 Insignificant: 16 Filtered: 0 Finish binding event prediction: 1.4m Refine read distribution from 88 binding events. --------------------------- Events discovered Significant: 139 Insignificant: 1 Filtered: 7 Finish binding event prediction: 3.1m Refine read distribution from 64 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 164 Insignificant: 11 Filtered: 2 Finish binding event prediction: 57.1s Refine read distribution from 115 binding events. --------------------------- Events discovered Significant: 1095 Insignificant: 1 Filtered: 60 Finish binding event prediction: 3.6m Refine read distribution from 262 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 372 Insignificant: 4 Filtered: 5 Finish binding event prediction: 3.5m Refine read distribution from 62 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 703 Insignificant: 61 Filtered: 6 Finish binding event prediction: 1.1m Refine read distribution from 425 binding events. --------------------------- Events discovered Significant: 280 Insignificant: 13 Filtered: 1 Finish binding event prediction: 42.1s Refine read distribution from 167 binding events. --------------------------- Events discovered Significant: 125 Insignificant: 24 Filtered: 0 Finish binding event prediction: 30.2s Refine read distribution from 89 binding events. --------------------------- Events discovered Significant: 382 Insignificant: 22 Filtered: 2 Finish binding event prediction: 1.5m Refine read distribution from 209 binding events. --------------------------- Events discovered Significant: 309 Insignificant: 14 Filtered: 1 Finish binding event prediction: 1.5m Refine read distribution from 170 binding events. --------------------------- Events discovered Significant: 899 Insignificant: 83 Filtered: 14 Finish binding event prediction: 34.2s Refine read distribution from 496 binding events. --------------------------- Events discovered Significant: 657 Insignificant: 74 Filtered: 8 Finish binding event prediction: 59.1s Refine read distribution from 415 binding events. --------------------------- Events discovered Significant: 288 Insignificant: 16 Filtered: 1 Finish binding event prediction: 37.1s Refine read distribution from 171 binding events. --------------------------- Events discovered Significant: 707 Insignificant: 0 Filtered: 114 Finish binding event prediction: 7.3m Refine read distribution from 79 binding events. Running with 1 threads ... --------------------------- Events discovered Significant: 653 Insignificant: 77 Filtered: 19 Finish binding event prediction: 1.8m Refine read distribution from 464 binding events.