Index of /kundaje/marinovg/oak/various/ENCODE4/Chromatin-nanopores

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]2018-02-09-NextSeq-run/2025-04-20 07:40 -  
[DIR]2018-03-02-NextSeq-run/2025-04-20 07:40 -  
[DIR]2018-03-06-nanopore-data-from-February/2025-04-20 07:40 -  
[DIR]2018-03-10-published-NOME-seq/2018-03-11 08:11 -  
[DIR]2018-04-08-S2-dSMF-ATAC/2018-04-19 08:14 -  
[DIR]2018-04-15-Drosophila-Bisulphite-GSE34425/2018-04-16 18:43 -  
[DIR]2018-04-18-Drosophila-STARR-seq-data-GSE40739/2018-04-19 11:18 -  
[DIR]2018-04-19-Drosophila-STARR-seq-data-GSE47691/2018-04-19 11:18 -  
[DIR]2018-04-23-Drosophila-STARR-seq-data-GSE40739-dm6/2018-04-23 17:21 -  
[DIR]2018-04-23-Drosophila-STARR-seq-data-GSE47691-dm6/2018-04-23 17:39 -  
[DIR]2018-04-27-plots/2025-04-20 07:44 -  
[DIR]2018-05-06-ENCODE-Drosophila-S2-data/2018-05-07 22:38 -  
[DIR]2018-05-07-Drosophila-MNAse-seq-data/2018-05-09 07:01 -  
[DIR]2018-05-07-Drosophila-PRO-seq-data/2018-05-07 22:43 -  
[DIR]2018-05-21-NextSeq-run-S2-ATAC/2025-04-20 07:45 -  
[DIR]2018-05-29-yeast-datasets/2021-01-22 22:08 -  
[DIR]2018-09-21-Drosophila-ATAC-PEAT-data/2018-09-22 23:24 -  
[DIR]2018-11-08-NextSeq-run/2022-04-05 23:01 -  
[DIR]2018-11-15-KMnO4-yeast-control-spike-in/2018-11-16 09:24 -  
[DIR]2018-11-16-KMnO4-Permangante-FirstRun/2018-11-16 15:38 -  
[DIR]2018-11-16-KMnO4-Permangante-SecondRun/2018-11-23 03:43 -  
[DIR]2018-11-28-KMnO4-Permangante-SecondRun-redo/2018-11-30 04:21 -  
[DIR]2018-12-07-S2-SMAC/2018-12-14 18:44 -  
[DIR]2018-12-16-S2-SMAC-additional-reads/2018-12-20 19:36 -  
[DIR]2019-01-03-S2-SMAC-additional-reads-reprocessing/2019-01-06 08:31 -  
[DIR]2019-01-09-barcode-design/2019-01-09 14:06 -  
[DIR]2019-01-10-alkylation/2019-02-22 06:34 -  
[DIR]2019-01-18-alkylation/2019-01-29 02:12 -  
[DIR]2019-02-04-alkylation-sacCer3-T7/2019-02-06 17:41 -  
[DIR]2019-02-06-alkylation-ConferenceCall/2019-03-07 15:55 -  
[DIR]2019-02-06-alkylation-all-contexts/2019-02-07 03:03 -  
[DIR]2019-02-07-Hi-CO-data/2023-02-15 20:28 -  
[DIR]2019-02-12-KMnO4-ES-tracks/2019-02-13 02:59 -  
[DIR]2019-02-13-KMnO4-Permangante-FirstRun-all-contexts-redo/2019-02-14 10:21 -  
[DIR]2019-02-13-KMnO4-Permangante-SecondRun-all-contexts-redo/2019-02-14 11:09 -  
[DIR]2019-02-21-Haloferax-CLAPP/2019-02-23 13:37 -  
[DIR]2019-02-21-alkylation-HhaI/2019-02-22 12:25 -  
[DIR]2019-02-25-rDNA-ATAC-seq/2019-02-26 01:56 -  
[DIR]2019-03-02-alkylation-BcnI/2019-03-02 20:57 -  
[DIR]2019-03-02-sacCer3-CLAPP/2019-03-03 00:47 -  
[DIR]2019-03-02-sacCer3-KMnO4/2019-03-03 00:04 -  
[DIR]2019-03-03-rDNA-146-147-SMAC/2019-03-26 20:13 -  
[DIR]2019-03-28-S2-SMAC-additional-reads/2019-04-28 04:41 -  
[DIR]2019-04-01-restriction-sites/2019-04-02 16:08 -  
[DIR]2019-04-06-Drosophila-Hi-C-data/2022-01-22 09:41 -  
[DIR]2019-04-08-NextSeq-run-S2-ChIP/2022-01-22 09:49 -  
[DIR]2019-04-10-CTCF-CLAPP-design/2019-04-10 16:45 -  
[DIR]2019-04-10-EcoGII-AdoHexynN3-test/2019-04-11 17:24 -  
[DIR]2019-04-10-Haloferax-CLAPP-control/2019-04-19 01:41 -  
[DIR]2019-04-10-NucleoSMAC/2022-01-22 13:05 -  
[DIR]2019-04-15-S2-SMAC-plots-2/2019-05-08 10:03 -  
[DIR]2019-04-15-S2-SMAC-plots/2019-05-08 10:14 -  
[DIR]2019-04-17-alk-SMAC/2019-05-01 12:24 -  
[DIR]2019-04-23-Drosophila-MNAse-seq-data-dm3/2019-07-16 05:08 -  
[DIR]2019-04-23-Drosophila-PRO-seq-data-dm3/2019-04-24 07:26 -  
[DIR]2019-04-23-ENCODE-Drosophila-S2-data-dm3/2019-04-24 16:29 -  
[DIR]2019-04-24-alk-SMAC-S2/2019-05-02 22:40 -  
[DIR]2019-05-12-S2-ATAC-dm3-remap/2019-05-13 05:04 -  
[DIR]2019-05-23-Oct4-Sox2-BPNet-plasmids/2019-05-31 22:04 -  
[DIR]2019-05-28-alkylation-SDS/2019-06-08 13:05 -  
[DIR]2019-05-28-poreChIP-minION/2019-06-10 03:26 -  
[DIR]2019-05-29-GM12878-SMAC/2019-06-02 10:42 -  
[DIR]2019-06-01-NextSeq-run-EM-seq/2025-04-20 07:48 -  
[DIR]2019-06-17-NextSeq-run-EM-seq/2025-04-20 07:48 -  
[DIR]2019-06-18-Sox2-crosslinking/2019-07-05 18:25 -  
[DIR]2019-06-21-nanoEM-CpG/2019-07-05 18:44 -  
[DIR]2019-06-27-NextSeq-run-EM-seq/2019-08-03 05:59 -  
[DIR]2019-08-10-Sox2-crosslinking/2019-08-11 04:37 -  
[DIR]2019-09-06-Sox2-crosslinking-125nM-reprocessing/2019-09-08 00:34 -  
[DIR]2019-09-13-S2-SMAC/2019-09-15 09:02 -  
[DIR]2019-10-17-MlyI-controls/2019-10-19 03:06 -  
[DIR]2019-10-20-S2-SMAC-generic/2019-10-21 14:51 -  
[DIR]2019-10-25-MlyI-controls-reanalysis/2019-10-25 22:02 -  
[DIR]2019-11-20-S2-SMAC_PromethION_SizeSelection/2019-11-23 10:45 -  
[DIR]2019-11-26-Tetrahymena-nanopore/2019-11-27 17:22 -  
[DIR]2019-12-07-S2-nanopore-assembly/2022-01-23 11:48 -  
[DIR]2019-12-18-Michaela-MAChromMod/2020-01-22 00:49 -  
[DIR]2019-12-24-S2_SMAC_Alky_KAS_Seq_Human/2019-12-25 02:42 -  
[DIR]2020-01-20-Michaela-MAChromMod/2020-01-22 00:40 -  
[DIR]2020-02-16-S2-SMAC_merge/2020-02-21 20:20 -  
[DIR]2020-03-03-AlkSMAC-clipping-reanalysis/2020-03-03 16:09 -  
[DIR]2020-03-13-MeSMLR-seq-KFAu/2020-03-18 16:08 -  
[DIR]2020-03-15-HG00514/2020-03-18 17:00 -  
[DIR]2020-05-11-plots/2022-01-22 13:11 -  
[DIR]2020-06-25-Fiber-seq/2023-02-11 12:19 -  
[DIR]2020-07-17-base_calling_new_pipeline/2022-01-22 09:42 -  
[DIR]2020-08-25-base_calling_new_pipeline/2022-01-22 09:42 -  
[DIR]2020-12-03-NextSeq/2025-04-20 07:58 -  
[DIR]2021-02-10-NextSeq/2025-04-20 07:40 -  
[DIR]2021-03-05-eccDNA-SMAC-seq/2021-03-21 00:47 -  
[DIR]2021-03-18-NextSeq/2025-04-20 07:58 -  
[DIR]2021-03-20-NextSeq/2025-04-20 07:58 -  
[DIR]2021-04-03-eccDNA-assembly/2021-04-04 20:01 -  
[DIR]2021-06-07-PC3/2021-06-09 05:53 -  
[DIR]2021-06-08-ATAC-seq-data/2021-06-09 11:18 -  
[DIR]2021-06-08-ChIP-seq-data/2021-06-09 05:45 -  
[DIR]2021-06-09-figures/2021-06-14 11:28 -  
[DIR]2021-06-17-external-NOMe-seq/2025-04-20 07:59 -  
[DIR]2021-06-23-PC3-COLO-eccDNA-SMAC-seq/2021-06-23 08:41 -  
[DIR]2021-09-03-ChIP-SMF/2025-04-20 08:00 -  
[DIR]2021-09-29-mESC-dSMF/2025-04-20 08:01 -  
[DIR]2021-11-09-osteosarcoma-Hi-C-assembly/2025-04-20 08:03 -  
[DIR]2021-11-15-Saulius-DNAmod/2025-04-20 08:04 -  
[DIR]2021-12-07-OS-meeting/2021-12-09 21:03 -  
[DIR]2022-01-22-Novogene-OS-NovaSeq/2025-04-20 08:05 -  
[DIR]2022-03-17-longread-SMF-Julia-test/2022-03-18 22:35 -  
[DIR]2022-03-29-ChIP-SMF/2025-04-20 08:05 -  
[DIR]2022-05-23-NextSeq-ChIP-check/2022-05-25 09:40 -  
[DIR]2022-07-09-NextSeq-run/2022-07-15 12:04 -  
[DIR]2022-08-04-ChIP-check/2022-08-08 14:54 -  
[DIR]2022-10-13-ChIP-SMF-fixation-check/2022-10-14 14:20 -  
[DIR]2022-10-31-NextSeq-run/2025-04-20 08:06 -  
[DIR]2022-11-16-NextSeq-run/2022-11-18 19:01 -  
[DIR]2022-12-02-NextSeq-run/2023-05-26 08:30 -  
[DIR]2022-12-24-NextSeq-run/2022-12-26 20:56 -  
[DIR]2023-01-08-NextSeq-run/2023-01-13 17:50 -  
[DIR]2023-01-14-NextSeq-run/2023-01-24 13:16 -  
[DIR]2023-01-26-KAS-SMAC-RNA_SMAC/2023-02-02 16:23 -  
[DIR]2023-01-30-NextSeq-run/2023-02-02 10:41 -  
[DIR]2023-02-06-SMAC-test/2023-02-17 16:51 -  
[DIR]2023-02-17-SMAC-pipelibe-retest-GM12878/2025-04-20 08:07 -  
[DIR]2023-02-18-NextSeq-run/2023-02-21 09:10 -  
[DIR]2023-02-21-SMAC-pipeline-retest-yeast/2025-04-20 08:07 -  
[DIR]2023-02-23-NextSeq-run/2023-03-07 05:14 -  
[DIR]2023-04-05-ecDNA-data-recovery/2023-04-18 16:10 -  
[DIR]2023-04-20-ecDNA-SMAC-seq/2024-01-25 23:44 -  
[DIR]2023-04-20-gDNA-Flongle/2023-04-26 12:28 -  
[DIR]2023-04-25-2021-06-08-FAK93201_PC3_SMAC_seq_Enriched_sgRNA3/2024-01-21 22:57 -  
[DIR]2023-04-26-2021-07-13-0065_9_5/2024-01-21 23:25 -  
[DIR]2023-04-26-2021-07-16-0065_9_4/2024-01-21 23:31 -  
[DIR]2023-06-03-NextSeq-run/2023-06-06 07:22 -  
[DIR]2023-11-10-2023-04-20-ecDNA-SMAC-seq-dorado/2025-04-20 08:08 -  
[DIR]2024-08-27-EcoGII-Hia5-test/2024-09-22 10:54 -  
[DIR]2024-10-02-C1219-Flongle/2024-10-11 01:36 -  
[DIR]2024-10-06-C1219-Flongle/2025-05-12 01:14 -  
[DIR]2024-10-06-NextSeq/2024-10-09 17:18 -  
[DIR]2024-10-13-NextSeq/2024-10-18 09:30 -  
[DIR]2024-10-15-nanoKAS-Flongle/2024-10-16 22:16 -  
[DIR]2024-10-20-NextSeq/2024-10-23 03:38 -  
[DIR]2024-11-12-NextSeq-run/2024-11-14 02:16 -  
[DIR]2024-11-18-NextSeq-run/2024-11-19 15:02 -  
[DIR]2024-11-20-NextSeq-run/2024-11-22 07:16 -  
[DIR]2024-11-24-NextSeq-run/2024-11-28 11:12 -  
[DIR]2024-11-29-NextSeq-run/2024-12-15 17:18 -  
[DIR]2024-12-07-Flongle-2/2024-12-20 00:04 -  
[DIR]2024-12-07-NextSeq-run-2/2024-12-20 21:32 -  
[DIR]2024-12-11-SMF-MinION/2024-12-21 03:51 -  
[DIR]2025-01-23-NextSeq-run/2025-01-27 11:23 -  
[DIR]2025-01-26-NextSeq-run/2025-02-06 21:14 -  
[DIR]2025-01-28-Ultima-run/2025-06-28 04:57 -  
[DIR]2025-02-03-NextSeq-run/2025-02-07 06:59 -  
[DIR]2025-02-05-NextSeq-run-ecDNA/2025-02-07 15:23 -  
[DIR]2025-02-06-HCMV-MinION/2025-04-17 05:29 -  
[DIR]2025-02-07-2025-01-23-NextSeq-mouse-rerun/2025-02-12 18:30 -  
[DIR]2025-02-18-NextSeq-run/2025-05-12 01:15 -  
[DIR]2025-02-25-Flongles/2025-06-06 13:57 -  
[DIR]2025-02-27-Hi-SMF-Flongle/2025-05-12 00:58 -  
[DIR]2025-02-27-NextSeq-run/2025-03-01 07:04 -  
[DIR]2025-03-01-ecDNA-chrM/2025-03-02 09:45 -  
[DIR]2025-03-08-MiSeq-Zhifei/2025-03-12 02:24 -  
[DIR]2025-03-08-NextSeq-run/2025-03-09 19:08 -  
[DIR]2025-03-17-GPW-NextSeq/2025-03-19 19:39 -  
[DIR]2025-03-19-NextSeq-run/2025-04-01 11:40 -  
[DIR]2025-04-02-Ed_Gelernt_BAM_files_check/2025-04-03 05:34 -  
[DIR]2025-04-09-genome-wide-primer-design/2026-02-06 16:36 -  
[DIR]2025-04-14-K562-MinIONs/2025-05-31 07:25 -  
[DIR]2025-04-21-NextSeq-run-native-retest/2025-04-23 03:05 -  
[DIR]2025-05-12-Guiping-test/2025-05-13 11:58 -  
[DIR]2025-07-10-NextSeq-run/2025-07-13 14:10 -  
[DIR]2025-07-17-NextSeq-run/2025-07-18 21:13 -  
[DIR]2025-07-21-NextSeq-run/2025-07-24 21:47 -  
[DIR]2025-07-24-CUTnTag-SMF-Flongle/2025-07-26 02:16 -  
[DIR]2025-07-26-NextSeq-run/2025-07-31 05:03 -  
[DIR]2025-08-03-NextSeq-run/2025-08-05 08:22 -  
[DIR]2025-08-09-NextSeq-run-rerun/2025-09-16 02:08 -  
[DIR]2025-08-09-NextSeq-run/2025-08-11 13:07 -  
[DIR]2025-08-11-NextSeq-run/2025-08-14 14:38 -  
[DIR]2025-08-13-NextSeq-run/2025-09-01 16:07 -  
[DIR]2025-08-20-NextSeq-run/2025-08-26 00:33 -  
[DIR]2025-08-20-NextSeq-run2/2025-10-07 09:13 -  
[DIR]2025-08-30-HCMV-GFP-realign/2025-08-30 11:07 -  
[DIR]2025-09-27-NextSeq-run/2025-10-13 22:38 -  
[DIR]2025-10-01-figures/2025-10-01 00:49 -  
[DIR]2025-10-05-NextSeq-run/2025-10-09 04:15 -  
[DIR]2025-10-13-NextSeq-run/2025-10-17 13:40 -  
[DIR]2025-10-23-NextSeq-run/2025-10-26 12:25 -  
[DIR]2025-10-29-NextSeq-run/2025-11-04 20:17 -  
[DIR]2025-11-05-NextSeq-run/2025-11-06 23:07 -  
[DIR]2025-11-09-NextSeq-run/2025-11-14 16:35 -  
[DIR]2025-11-13-NextSeq-run/2025-11-16 12:04 -  
[DIR]2025-12-04-NextSeq-run/2025-12-08 22:11 -  
[DIR]2025-12-15-NextSeq-run/2026-02-11 20:34 -  
[DIR]2025-12-15-Vinson-amplicons/2025-12-16 01:26 -  
[DIR]2026-01-16-Ultima-run-HCMV-hg38-regeneration/2026-02-19 05:12 -  
[DIR]2026-01-16-Ultima-run-HCMV/2026-01-27 11:30 -  
[DIR]2026-01-16-Ultima-run-Tetrahymena/2026-02-04 15:28 -  
[DIR]2026-02-08-NextSeq-run/2026-02-17 10:59 -  
[DIR]2026-02-15-NextSeq-run/2026-02-19 12:01 -  
[DIR]2026-02-28-NextSeq-run/2026-03-02 20:38 -  
[DIR]2026-03-17-Matt_yeast_split_CseDa01/2026-03-18 01:28 -  
[DIR]2026-03-17-NextSeq-run/2026-03-24 15:02 -  
[DIR]2026-03-18-GPW-NextSeq/2026-03-24 16:55 -  
[DIR]2026-03-26-NextSeq-run/2026-03-29 16:23 -  
[DIR]2026-03-26-primer-design/2026-04-01 12:55 -  
[DIR]2026-03-27-NextSeq-run/2026-04-01 10:39 -  
[ ]EMSeq-manualE7120-1.pdf2019-06-03 21:46 1.5M 
[DIR]GSE66386-NucleoATAC/2018-04-24 09:25 -  
[DIR]datasets-Drosophila-ATAC-GSE103177-dm6/2018-09-22 23:24 -  
[DIR]datasets-Drosophila-ENCODE-PAS-DNAse-dm3/2019-04-24 16:29 -  
[DIR]datasets-Drosophila-ENCODE-PAS-DNAse/2018-05-07 22:38 -  
[DIR]datasets-Drosophila-MNAse-GSE58956-dm3/2019-04-24 07:01 -  
[DIR]datasets-Drosophila-MNAse-GSE58956-dm6/2018-05-09 07:01 -  
[DIR]datasets-Drosophila-PRO-seq-dm3/2019-04-24 07:26 -  
[DIR]datasets-Drosophila-PRO-seq-dm6/2018-05-07 22:43 -  
[DIR]datasets-Drosophila-STARR-seq-GSE40739-dm3/2018-04-19 11:18 -  
[DIR]datasets-Drosophila-STARR-seq-GSE40739-dm6/2018-04-23 17:19 -  
[DIR]datasets-Drosophila-STARR-seq-GSE47691-dm3/2018-04-19 11:18 -  
[DIR]datasets-Drosophila-STARR-seq-GSE47691-dm6/2018-05-07 22:43 -  
[DIR]nanopolish-Zohar/2019-01-25 07:01 -  
[ ]z2025-06-11 03:14 3  
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443