python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.minus.wig -notitle -RPM -uniqueBAM -stranded -