module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.bam OUTPUT=L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5811-HEK_SPI1_1_SPI_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.bam OUTPUT=L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5812-HEK_SPI1_0.5_SPI_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.bam OUTPUT=L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5813-HEK_SPI1_0.25_SPI_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.bam OUTPUT=L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5814-HEK_SPI1_0.05_SPI_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.bam OUTPUT=L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5815-HEK_SOX2_1_SOX_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.bam OUTPUT=L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5816-HEK_SOX2_0.75_SOX_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.bam OUTPUT=L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5817-HEK_SOX2_0.5_SOX_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.bam OUTPUT=L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5818-HEK_SOX2_0.25_SOX_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.bam OUTPUT=L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5819-HEK_SOX2_0.05_SOX_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.bam OUTPUT=L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5820-HEK_IRF4_1_IRF4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.bam OUTPUT=L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5821-HEK_IRF4_0.5_IRF4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.bam OUTPUT=L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5822-HEK_IRF4_0.25_IRF4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.bam OUTPUT=L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5823-HEK_IRF4_0.05_IRF4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.bam OUTPUT=L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5824-HEK_LEF1_1_LEF1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.bam OUTPUT=L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5825-HEK_LEF1_0.5_LEF1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.bam OUTPUT=L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5826-HEK_LEF1_0.25_LEF1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.bam OUTPUT=L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5827-HEK_LEF1_0.05_LEF1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.bam OUTPUT=L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5828-HEK_ALX4_1_ALX4-FLAG_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.bam OUTPUT=L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5829-HEK_ALX4_0.5_ALX4-FLAG_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.bam OUTPUT=L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5830-HEK_ALX4_0.25_ALX4-FLAG_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.bam OUTPUT=L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.bam METRICS_FILE=L5831-HEK_ALX4_0.05_ALX4-FLAG_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true