Rscript ~/code/spp/spp_package/run_spp.R -c=L5770-HEK_SPI1_1_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5770-HEK_SPI1_1_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5771-HEK_SPI1_0.5_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5771-HEK_SPI1_0.5_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5772-HEK_SPI1_0.25_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5772-HEK_SPI1_0.25_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5773-HEK_SPI1_0.05_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5773-HEK_SPI1_0.05_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5774-HEK_SOX2_1_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5774-HEK_SOX2_1_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5775-HEK_SOX2_0.75_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5775-HEK_SOX2_0.75_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5776-HEK_SOX2_0.5_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5776-HEK_SOX2_0.5_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5777-HEK_SOX2_0.25_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5777-HEK_SOX2_0.25_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5778-HEK_SOX2_0.05_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5778-HEK_SOX2_0.05_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5779-HEK_IRF4_1_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5779-HEK_IRF4_1_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5780-HEK_IRF4_0.5_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5780-HEK_IRF4_0.5_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5781-HEK_IRF4_0.25_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5781-HEK_IRF4_0.25_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5782-HEK_IRF4_0.05_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5782-HEK_IRF4_0.05_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5783-HEK_LEF1_1_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5783-HEK_LEF1_1_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5784-HEK_LEF1_0.5_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5784-HEK_LEF1_0.5_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5785-HEK_LEF1_0.25_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5785-HEK_LEF1_0.25_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5786-HEK_LEF1_0.05_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5786-HEK_LEF1_0.05_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5787-HEK_ALX4_1_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5787-HEK_ALX4_1_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5788-HEK_ALX4_0.5_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5788-HEK_ALX4_0.5_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5789-HEK_ALX4_0.25_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5789-HEK_ALX4_0.25_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5790-HEK_ALX4_0.05_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5790-HEK_ALX4_0.05_ALX4-FLAG_ChIP.1x36mers.QC