/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5770-HEK_SPI1_1_SPI_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5770-HEK_SPI1_1_SPI_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5771-HEK_SPI1_0.5_SPI_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5771-HEK_SPI1_0.5_SPI_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5772-HEK_SPI1_0.25_SPI_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5772-HEK_SPI1_0.25_SPI_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5773-HEK_SPI1_0.05_SPI_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5773-HEK_SPI1_0.05_SPI_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5774-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5774-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5775-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5775-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5776-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5776-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5777-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5777-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5778-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5778-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5779-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5779-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5780-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5780-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5781-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5781-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5782-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5782-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5783-HEK_LEF1_1_LEF1_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5783-HEK_LEF1_1_LEF1_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5784-HEK_LEF1_0.5_LEF1_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5784-HEK_LEF1_0.5_LEF1_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5785-HEK_LEF1_0.25_LEF1_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5785-HEK_LEF1_0.25_LEF1_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5786-HEK_LEF1_0.05_LEF1_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5786-HEK_LEF1_0.05_LEF1_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5787-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5787-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5788-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5788-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5789-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5789-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t L5790-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam -c L5674-HEK_Input_post_spin.2x36mers.unique.dedup.bam -n L5790-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup.MACS-2.1.0 -g hs -f BAMPE