Index of /kundaje/marinovg/oak/various/ENCODE4/ChIP/2026-02-12-MKay-MeRIP

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]-minMax2026-03-15 01:19 0  
[ ]1001_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 17M 
[ ]1001_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 12M 
[DIR]1001_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1001_IP.end1.fastq.gz2026-02-13 00:16 213M 
[ ]1001_IP.fastq.lines2026-02-13 22:54 9  
[ ]1001_IP_S11_I1_001.fastq.gz2026-02-13 00:15 37M 
[ ]1001_IP_S11_I2_001.fastq.gz2026-02-13 00:15 35M 
[ ]1001_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 7.9M 
[ ]1001_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:54 4.9M 
[DIR]1001_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1001_Input.end1.fastq.gz2026-02-13 00:15 484M 
[ ]1001_Input.fastq.lines2026-02-13 22:54 9  
[ ]1001_Input_S1_I1_001.fastq.gz2026-02-13 00:14 79M 
[ ]1001_Input_S1_I2_001.fastq.gz2026-02-13 00:14 79M 
[ ]1002_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 10M 
[ ]1002_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 7.0M 
[DIR]1002_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1002_IP.end1.fastq.gz2026-02-13 00:20 177M 
[ ]1002_IP.fastq.lines2026-02-13 22:54 9  
[ ]1002_IP_S12_I1_001.fastq.gz2026-02-13 00:20 30M 
[ ]1002_IP_S12_I2_001.fastq.gz2026-02-13 00:20 35M 
[ ]1002_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 5.7M 
[ ]1002_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:54 3.7M 
[DIR]1002_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1002_Input.end1.fastq.gz2026-02-13 00:17 283M 
[ ]1002_Input.fastq.lines2026-02-13 22:55 9  
[ ]1002_Input_S2_I1_001.fastq.gz2026-02-13 00:16 50M 
[ ]1002_Input_S2_I2_001.fastq.gz2026-02-13 00:17 52M 
[ ]1003_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 28M 
[ ]1003_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 18M 
[DIR]1003_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1003_IP.end1.fastq.gz2026-02-13 00:22 574M 
[ ]1003_IP.fastq.lines2026-02-13 22:54 9  
[ ]1003_IP_S13_I1_001.fastq.gz2026-02-13 00:21 99M 
[ ]1003_IP_S13_I2_001.fastq.gz2026-02-13 00:21 98M 
[ ]1003_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 4.1M 
[ ]1003_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 2.2M 
[DIR]1003_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1003_Input.end1.fastq.gz2026-02-13 00:22 1.2G 
[ ]1003_Input.fastq.lines2026-02-13 22:54 9  
[ ]1003_Input_S3_I1_001.fastq.gz2026-02-13 00:20 183M 
[ ]1003_Input_S3_I2_001.fastq.gz2026-02-13 00:20 177M 
[ ]1914_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 27M 
[ ]1914_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:54 18M 
[DIR]1914_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1914_IP.end1.fastq.gz2026-02-13 00:22 327M 
[ ]1914_IP.fastq.lines2026-02-13 22:54 9  
[ ]1914_IP_S20_I1_001.fastq.gz2026-02-13 00:21 58M 
[ ]1914_IP_S20_I2_001.fastq.gz2026-02-13 00:21 59M 
[ ]1914_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 36M 
[ ]1914_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 18M 
[DIR]1914_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1914_Input.end1.fastq.gz2026-02-13 00:25 2.6G 
[ ]1914_Input.fastq.lines2026-02-13 22:55 10  
[ ]1914_Input_S10_I1_001.fastq.gz2026-02-13 00:22 412M 
[ ]1914_Input_S10_I2_001.fastq.gz2026-02-13 00:22 411M 
[ ]1954_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 26M 
[ ]1954_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 17M 
[DIR]1954_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1954_IP.end1.fastq.gz2026-02-13 00:23 463M 
[ ]1954_IP.fastq.lines2026-02-13 22:54 9  
[ ]1954_IP_S19_I1_001.fastq.gz2026-02-13 00:22 86M 
[ ]1954_IP_S19_I2_001.fastq.gz2026-02-13 00:22 85M 
[ ]1954_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 32M 
[ ]1954_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 18M 
[DIR]1954_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1954_Input.end1.fastq.gz2026-02-13 00:24 905M 
[ ]1954_Input.fastq.lines2026-02-13 22:54 9  
[ ]1954_Input_S9_I1_001.fastq.gz2026-02-13 00:22 144M 
[ ]1954_Input_S9_I2_001.fastq.gz2026-02-13 00:22 143M 
[ ]1970_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 25M 
[ ]1970_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 19M 
[DIR]1970_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1970_IP.end1.fastq.gz2026-02-13 01:07 526M 
[ ]1970_IP.fastq.lines2026-02-13 22:55 9  
[ ]1970_IP_S18_I1_001.fastq.gz2026-02-13 01:01 89M 
[ ]1970_IP_S18_I2_001.fastq.gz2026-02-13 01:01 86M 
[ ]1970_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 2.2M 
[ ]1970_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 1.3M 
[DIR]1970_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]1970_Input.end1.fastq.gz2026-02-13 01:08 375M 
[ ]1970_Input.fastq.lines2026-02-13 22:54 9  
[ ]1970_Input_S8_I1_001.fastq.gz2026-02-13 01:02 62M 
[ ]1970_Input_S8_I2_001.fastq.gz2026-02-13 01:01 65M 
[ ]2013_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 11M 
[ ]2013_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 7.8M 
[DIR]2013_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2013_IP.end1.fastq.gz2026-02-13 01:11 510M 
[ ]2013_IP.fastq.lines2026-02-13 22:54 9  
[ ]2013_IP_S17_I1_001.fastq.gz2026-02-13 01:03 92M 
[ ]2013_IP_S17_I2_001.fastq.gz2026-02-13 01:03 97M 
[ ]2013_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 13M 
[ ]2013_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 7.4M 
[DIR]2013_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2013_Input.end1.fastq.gz2026-02-13 01:08 444M 
[ ]2013_Input.fastq.lines2026-02-13 22:54 9  
[ ]2013_Input_S7_I1_001.fastq.gz2026-02-13 01:02 77M 
[ ]2013_Input_S7_I2_001.fastq.gz2026-02-13 01:02 78M 
[ ]2455_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 25M 
[ ]2455_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 18M 
[DIR]2455_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2455_IP.end1.fastq.gz2026-02-13 01:15 536M 
[ ]2455_IP.fastq.lines2026-02-13 22:54 9  
[ ]2455_IP_S16_I1_001.fastq.gz2026-02-13 01:06 86M 
[ ]2455_IP_S16_I2_001.fastq.gz2026-02-13 01:07 97M 
[ ]2455_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 5.4M 
[ ]2455_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 3.1M 
[DIR]2455_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2455_Input.end1.fastq.gz2026-02-13 01:11 484M 
[ ]2455_Input.fastq.lines2026-02-13 22:55 9  
[ ]2455_Input_S6_I1_001.fastq.gz2026-02-13 01:04 77M 
[ ]2455_Input_S6_I2_001.fastq.gz2026-02-13 01:04 85M 
[ ]2551_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 21M 
[ ]2551_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 16M 
[DIR]2551_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2551_IP.end1.fastq.gz2026-02-13 01:17 402M 
[ ]2551_IP.fastq.lines2026-02-13 22:54 9  
[ ]2551_IP_S15_I1_001.fastq.gz2026-02-13 01:11 74M 
[ ]2551_IP_S15_I2_001.fastq.gz2026-02-13 01:12 68M 
[ ]2551_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 9.2M 
[ ]2551_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 5.0M 
[DIR]2551_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]2551_Input.end1.fastq.gz2026-02-13 01:21 911M 
[ ]2551_Input.fastq.lines2026-02-13 22:55 9  
[ ]2551_Input_S5_I1_001.fastq.gz2026-02-13 01:10 145M 
[ ]2551_Input_S5_I2_001.fastq.gz2026-02-13 01:10 146M 
[ ]D3_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:55 20M 
[ ]D3_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 16M 
[DIR]D3_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]D3_IP.end1.fastq.gz2026-02-13 01:21 670M 
[ ]D3_IP.fastq.lines2026-02-13 22:55 9  
[ ]D3_IP_S14_I1_001.fastq.gz2026-02-13 01:15 113M 
[ ]D3_IP_S14_I2_001.fastq.gz2026-02-13 01:16 112M 
[ ]D3_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 21M 
[ ]D3_Input-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 13M 
[DIR]D3_Input-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]D3_Input.end1.fastq.gz2026-02-13 01:21 900M 
[ ]D3_Input.fastq.lines2026-02-13 22:54 9  
[ ]D3_Input_S4_I1_001.fastq.gz2026-02-13 01:13 144M 
[ ]D3_Input_S4_I2_001.fastq.gz2026-02-13 01:14 157M 
[DIR]DESeq2-eXpress/2026-03-23 08:13 -  
[ ]Index_info.xlsx2026-02-13 03:39 11K 
[ ]NC_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.bigWig2026-02-14 13:54 395K 
[ ]NC_IP-STAR-2.5.3a-STAR-2.5.3a-Aligned.sortedByCoord.hg38.unique.bigWig2026-02-14 13:55 186K 
[DIR]NC_IP-STAR-2.5.3a/2026-03-23 07:47 -  
[ ]NC_IP.end1.fastq.gz2026-02-13 01:19 243M 
[ ]NC_IP.fastq.lines2026-02-13 22:54 9  
[ ]NC_IP_S21_I1_001.fastq.gz2026-02-13 01:16 45M 
[ ]NC_IP_S21_I2_001.fastq.gz2026-02-13 01:16 48M 
[ ]SAMstats.files2026-02-14 13:54 930  
[ ]SAMstats.table2026-02-14 13:54 1.4K 
[ ]SAMstats.tar.gz2026-02-14 13:54 1.4K 
[ ]coverage.files2026-02-14 13:53 1.0K 
[ ]coverage.table2026-03-04 17:42 40K 
[ ]coverage.tar.gz2026-03-04 17:43 23K 
[ ]express-1.5.1.2x50mers.TPM.files2026-03-23 07:46 1.2K 
[ ]express-1.5.1.2x50mers.TPM.table2026-03-23 07:47 4.8M 
[ ]express-1.5.1.2x50mers.eff_counts.files2026-03-23 07:47 1.2K 
[ ]express-1.5.1.2x50mers.eff_counts.int.table2026-03-23 07:54 1.6M 
[ ]express-1.5.1.2x50mers.eff_counts.table2026-03-23 07:47 4.2M 
[ ]express-individual-files.tar.gz2026-03-23 07:53 76M 
[ ]sam_reads_in_genes.files2026-02-14 13:52 1.2K 
[ ]sam_reads_in_genes.table2026-02-14 13:54 1.2K 
[ ]sam_reads_in_genes.tar.gz2026-02-14 13:54 1.2K 
[ ]stringtie-2.0-1001_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-1001_Input.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-1002_IP.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-1002_Input.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-1003_IP.quants2026-03-07 17:31 1.6M 
[ ]stringtie-2.0-1003_Input.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-1914_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-1914_Input.quants2026-03-07 17:33 1.6M 
[ ]stringtie-2.0-1954_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-1954_Input.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-1970_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-1970_Input.quants2026-03-07 17:32 1.4M 
[ ]stringtie-2.0-2013_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-2013_Input.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-2455_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-2455_Input.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-2551_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-2551_Input.quants2026-03-07 17:32 1.5M 
[ ]stringtie-2.0-D3_IP.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-D3_Input.quants2026-03-07 17:32 1.6M 
[ ]stringtie-2.0-NC_IP.quants2026-03-07 17:31 1.3M 
[ ]stringtie-2.0.FPKM.files2026-03-07 18:04 909  
[ ]stringtie-2.0.FPKM.table2026-03-07 18:12 4.2M 
[ ]stringtie-2.0.TPM.files2026-03-07 18:04 909  
[ ]stringtie-2.0.TPM.min20TPM+1.table2026-03-15 01:01 1.4M 
[ ]stringtie-2.0.TPM.min20TPM.ratio.xlsx2026-03-15 01:52 6.1M 
[ ]stringtie-2.0.TPM.min20TPM.ratios.xlsx2026-03-15 01:52 6.1M 
[ ]stringtie-2.0.TPM.table2026-03-15 01:20 4.3M 
[ ]stringtie-2.0.min20TPM.log2TPM+1.atr2026-03-15 01:34 618  
[IMG]stringtie-2.0.min20TPM.log2TPM+1.cdt2026-03-15 01:34 1.7M 
[ ]stringtie-2.0.min20TPM.log2TPM+1.gtr2026-03-15 01:34 321K 
[ ]stringtie-2.0.min20TPM.log2TPM+1.jtv2026-03-15 01:42 966  
[IMG]stringtie-2.0.min20TPM.log2TPM+1.png2026-03-15 01:43 74K 
[ ]stringtie-2.0.min20TPM.log2TPM+1.table2026-03-15 01:20 1.8M 
[IMG]stringtie-2.0.min20TPM.log2TPM+1_colorbar.png2026-03-15 01:44 627  
[ ]z2026-03-23 07:57 204  
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443