Rscript ~/code/spp/spp_package/run_spp.R -c=L5010-HEK_GFP_1_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5010-HEK_GFP_1_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5040-HEK_GFP_1_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5040-HEK_GFP_1_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5041-HEK_SPI1_1_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5041-HEK_SPI1_1_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5042-HEK_SPI1_0.75_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5042-HEK_SPI1_0.75_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5043-HEK_SPI1_0.5_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5043-HEK_SPI1_0.5_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5044-HEK_SPI1_0.25_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5044-HEK_SPI1_0.25_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5045-HEK_SPI1_0.05_SPI_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5045-HEK_SPI1_0.05_SPI_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5046-HEK_SOX2_1_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5046-HEK_SOX2_1_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5047-HEK_SOX2_0.75_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5047-HEK_SOX2_0.75_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5048-HEK_SOX2_0.5_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5048-HEK_SOX2_0.5_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5049-HEK_SOX2_0.25_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5049-HEK_SOX2_0.25_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5050-HEK_SOX2_0.05_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5050-HEK_SOX2_0.05_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5051-HEK_IRF4_1_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5051-HEK_IRF4_1_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5052-HEK_IRF4_0.75_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5052-HEK_IRF4_0.75_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5053-HEK_IRF4_0.5_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5053-HEK_IRF4_0.5_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5054-HEK_IRF4_0.25_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5054-HEK_IRF4_0.25_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5055-HEK_IRF4_0.05_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5055-HEK_IRF4_0.05_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5056-HEK_LEF1_1_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5056-HEK_LEF1_1_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5057-HEK_LEF1_0.75_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5057-HEK_LEF1_0.75_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5058-HEK_LEF1_0.5_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5058-HEK_LEF1_0.5_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5059-HEK_LEF1_0.25_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5059-HEK_LEF1_0.25_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5060-HEK_LEF1_0.05_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5060-HEK_LEF1_0.05_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5061-HEK_ALX4_1_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5061-HEK_ALX4_1_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5062-HEK_ALX4_0.75_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5062-HEK_ALX4_0.75_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5063-HEK_ALX4_0.5_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5063-HEK_ALX4_0.5_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5064-HEK_ALX4_0.25_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5064-HEK_ALX4_0.25_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5065-HEK_ALX4_0.05_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5065-HEK_ALX4_0.05_ALX4-FLAG_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5066-HEK_SOX_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5066-HEK_SOX_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5067-HEK_IRF4_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5067-HEK_IRF4_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5068-HEK_LEF1_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5068-HEK_LEF1_ChIP.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L5069-HEK_ALX4-FLAG_ChIP.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L5069-HEK_ALX4-FLAG_ChIP.1x36mers.QC