Index of /kundaje/marinovg/oak/various/ENCODE4/ChIP/2025-11-26-NextSeq-run
Name
Last modified
Size
Description
Parent Directory
-
AMC1.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:49
164K
AMC1.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:38
17K
AMC1.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
8.8M
AMC1.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:32
2.5K
AMC1.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
25M
AMC1.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
25M
AMC1.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:07
8
AMC2.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:49
164K
AMC2.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:38
16K
AMC2.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
5.5M
AMC2.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:32
2.5K
AMC2.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
17M
AMC2.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
17M
AMC2.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:07
8
AMC3.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:49
164K
AMC3.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:38
17K
AMC3.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
8.5M
AMC3.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:32
2.5K
AMC3.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
25M
AMC3.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
26M
AMC3.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:07
8
AMC4.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:50
164K
AMC4.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:39
20K
AMC4.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
34M
AMC4.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:33
2.5K
AMC4.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
94M
AMC4.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
96M
AMC4.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:07
9
AMC5.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:50
164K
AMC5.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:38
19K
AMC5.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
26M
AMC5.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:33
2.5K
AMC5.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
71M
AMC5.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
73M
AMC5.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:08
8
AMC6.2x36mers.hg38-male.unique.TSS_profile
2025-12-02 05:50
164K
AMC6.2x36mers.hg38-male.unique.dedup.InsLen
2025-12-02 05:38
20K
AMC6.2x36mers.hg38-male.unique.dedup.bigWig
2025-12-02 05:43
29M
AMC6.2x36mers.hg38-male.unique.dedup.metrics
2025-12-02 05:33
2.5K
AMC6.251127_NB551514_0383_AH2JTFBGY2.end1.fastq.gz
2025-12-02 04:58
84M
AMC6.251127_NB551514_0383_AH2JTFBGY2.end2.fastq.gz
2025-12-02 04:58
85M
AMC6.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
2025-12-02 05:08
9
ATACTSSscore-ATAC-Bacteroides.txt
2025-12-02 06:15
2.4K
ATACTSSscore-ATAC.txt
2025-12-02 06:03
635
Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.5p.TSS_profile
2025-12-02 07:10
38K
ChIP_config
2025-12-02 05:00
9.8K
MACS
2025-12-02 12:25
2.1K
MACS-region-stats
2025-12-02 12:25
2.6K
MarkDuplicates.sh
2025-12-02 05:00
11K
PEInsertDistFromBAM-2x36mers.sh
2025-12-02 05:00
8.6K
SAMstats-1x36mers.files
2025-12-02 05:00
3.0K
SAMstats-1x36mers.sh
2025-12-02 05:00
9.7K
SAMstats-1x36mers.table
2025-12-02 09:01
2.4K
SAMstats-2x36mers.dedup.table
2025-12-02 13:42
2.4K
SAMstats-2x36mers.files
2025-12-02 05:00
6.3K
SAMstats-2x36mers.sh
2025-12-02 05:00
20K
SAMstats-2x36mers.table
2025-12-02 13:42
4.8K
SAMstats-2x36mers.unique.table
2025-12-02 13:42
2.4K
SAMstats-AMC1.2x36mers.chrM
2025-12-02 05:38
152
SAMstats-AMC1.2x36mers.hg38-male.unique
2025-12-02 05:38
154
SAMstats-AMC1.2x36mers.hg38-male.unique.dedup
2025-12-02 05:38
154
SAMstats-AMC2.2x36mers.chrM
2025-12-02 05:38
152
SAMstats-AMC2.2x36mers.hg38-male.unique
2025-12-02 05:38
153
SAMstats-AMC2.2x36mers.hg38-male.unique.dedup
2025-12-02 05:38
153
SAMstats-AMC3.2x36mers.chrM
2025-12-02 05:38
153
SAMstats-AMC3.2x36mers.hg38-male.unique
2025-12-02 05:38
154
SAMstats-AMC3.2x36mers.hg38-male.unique.dedup
2025-12-02 05:38
154
SAMstats-AMC4.2x36mers.chrM
2025-12-02 05:38
152
SAMstats-AMC4.2x36mers.hg38-male.unique
2025-12-02 05:40
154
SAMstats-AMC4.2x36mers.hg38-male.unique.dedup
2025-12-02 05:40
154
SAMstats-AMC5.2x36mers.chrM
2025-12-02 05:40
151
SAMstats-AMC5.2x36mers.hg38-male.unique
2025-12-02 05:40
154
SAMstats-AMC5.2x36mers.hg38-male.unique.dedup
2025-12-02 05:40
154
SAMstats-AMC6.2x36mers.chrM
2025-12-02 05:38
151
SAMstats-AMC6.2x36mers.hg38-male.unique
2025-12-02 05:40
154
SAMstats-AMC6.2x36mers.hg38-male.unique.dedup
2025-12-02 05:40
154
SAMstats-L4927-1_aerobic_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
150
SAMstats-L4928-1_aerobic_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L4929-1_aerobic_lysozyme_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L4930-1_aerobic_lysozyme_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
154
SAMstats-L4931-1_anaerobic_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
154
SAMstats-L4932-1_anaerobic_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
154
SAMstats-L4933-1_anaerobic_lysozyme_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
153
SAMstats-L4934-1_anaerobic_lysozyme_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L4935-2_aerobic_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L4936-2_aerobic_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
154
SAMstats-L4937-2_aerobic_lysozyme_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
152
SAMstats-L4938-2_aerobic_lysozyme_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:46
153
SAMstats-L4939-2_anaerobic_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
152
SAMstats-L4940-2_anaerobic_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:45
153
SAMstats-L4941-2_anaerobic_lysozyme_5.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L4942-2_anaerobic_lysozyme_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1
2025-12-02 05:44
153
SAMstats-L5010-HEK_GFP_1_Input.1x36mers.unique
2025-12-02 08:43
156
SAMstats-L5010-HEK_GFP_1_Input.2x36mers.unique
2025-12-02 13:28
156
SAMstats-L5010-HEK_GFP_1_Input.2x36mers.unique.dedup
2025-12-02 13:40
156
SAMstats-L5040-HEK_GFP_1_SPI_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5040-HEK_GFP_1_SPI_ChIP.2x36mers.unique
2025-12-02 11:07
155
SAMstats-L5040-HEK_GFP_1_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:07
155
SAMstats-L5041-HEK_SPI1_1_SPI_ChIP.1x36mers.unique
2025-12-02 07:37
154
SAMstats-L5041-HEK_SPI1_1_SPI_ChIP.2x36mers.unique
2025-12-02 11:09
155
SAMstats-L5041-HEK_SPI1_1_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:08
155
SAMstats-L5042-HEK_SPI1_0.75_SPI_ChIP.1x36mers.unique
2025-12-02 07:41
155
SAMstats-L5042-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique
2025-12-02 11:16
155
SAMstats-L5042-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:18
155
SAMstats-L5043-HEK_SPI1_0.5_SPI_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5043-HEK_SPI1_0.5_SPI_ChIP.2x36mers.unique
2025-12-02 11:07
154
SAMstats-L5043-HEK_SPI1_0.5_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:05
154
SAMstats-L5044-HEK_SPI1_0.25_SPI_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5044-HEK_SPI1_0.25_SPI_ChIP.2x36mers.unique
2025-12-02 11:08
155
SAMstats-L5044-HEK_SPI1_0.25_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:08
155
SAMstats-L5045-HEK_SPI1_0.05_SPI_ChIP.1x36mers.unique
2025-12-02 07:34
154
SAMstats-L5045-HEK_SPI1_0.05_SPI_ChIP.2x36mers.unique
2025-12-02 11:03
154
SAMstats-L5045-HEK_SPI1_0.05_SPI_ChIP.2x36mers.unique.dedup
2025-12-02 11:03
154
SAMstats-L5046-HEK_SOX2_1_SOX_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5046-HEK_SOX2_1_SOX_ChIP.2x36mers.unique
2025-12-02 11:08
155
SAMstats-L5046-HEK_SOX2_1_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 11:08
155
SAMstats-L5047-HEK_SOX2_0.75_SOX_ChIP.1x36mers.unique
2025-12-02 07:38
154
SAMstats-L5047-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique
2025-12-02 11:10
155
SAMstats-L5047-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 11:10
155
SAMstats-L5048-HEK_SOX2_0.5_SOX_ChIP.1x36mers.unique
2025-12-02 07:37
154
SAMstats-L5048-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique
2025-12-02 11:07
155
SAMstats-L5048-HEK_SOX2_0.5_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 11:07
155
SAMstats-L5049-HEK_SOX2_0.25_SOX_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5049-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique
2025-12-02 11:05
154
SAMstats-L5049-HEK_SOX2_0.25_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 11:05
154
SAMstats-L5050-HEK_SOX2_0.05_SOX_ChIP.1x36mers.unique
2025-12-02 07:39
155
SAMstats-L5050-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique
2025-12-02 11:14
155
SAMstats-L5050-HEK_SOX2_0.05_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 11:15
155
SAMstats-L5051-HEK_IRF4_1_IRF4_ChIP.1x36mers.unique
2025-12-02 07:34
154
SAMstats-L5051-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique
2025-12-02 11:03
154
SAMstats-L5051-HEK_IRF4_1_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:03
154
SAMstats-L5052-HEK_IRF4_0.75_IRF4_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5052-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique
2025-12-02 11:05
154
SAMstats-L5052-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:05
154
SAMstats-L5053-HEK_IRF4_0.5_IRF4_ChIP.1x36mers.unique
2025-12-02 07:38
154
SAMstats-L5053-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique
2025-12-02 11:10
155
SAMstats-L5053-HEK_IRF4_0.5_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:12
155
SAMstats-L5054-HEK_IRF4_0.25_IRF4_ChIP.1x36mers.unique
2025-12-02 07:39
155
SAMstats-L5054-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique
2025-12-02 11:14
155
SAMstats-L5054-HEK_IRF4_0.25_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:15
155
SAMstats-L5055-HEK_IRF4_0.05_IRF4_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5055-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique
2025-12-02 11:07
155
SAMstats-L5055-HEK_IRF4_0.05_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:08
155
SAMstats-L5056-HEK_LEF1_1_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5056-HEK_LEF1_1_LEF1_ChIP.2x36mers.unique
2025-12-02 11:04
154
SAMstats-L5056-HEK_LEF1_1_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:04
154
SAMstats-L5057-HEK_LEF1_0.75_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5057-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique
2025-12-02 11:04
154
SAMstats-L5057-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:04
154
SAMstats-L5058-HEK_LEF1_0.5_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5058-HEK_LEF1_0.5_LEF1_ChIP.2x36mers.unique
2025-12-02 11:06
154
SAMstats-L5058-HEK_LEF1_0.5_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:06
154
SAMstats-L5059-HEK_LEF1_0.25_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5059-HEK_LEF1_0.25_LEF1_ChIP.2x36mers.unique
2025-12-02 11:04
154
SAMstats-L5059-HEK_LEF1_0.25_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:05
154
SAMstats-L5060-HEK_LEF1_0.05_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5060-HEK_LEF1_0.05_LEF1_ChIP.2x36mers.unique
2025-12-02 11:04
154
SAMstats-L5060-HEK_LEF1_0.05_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:07
154
SAMstats-L5061-HEK_ALX4_1_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:36
154
SAMstats-L5061-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:09
155
SAMstats-L5061-HEK_ALX4_1_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:08
155
SAMstats-L5062-HEK_ALX4_0.75_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:38
154
SAMstats-L5062-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:11
155
SAMstats-L5062-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:13
155
SAMstats-L5063-HEK_ALX4_0.5_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:38
154
SAMstats-L5063-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:12
155
SAMstats-L5063-HEK_ALX4_0.5_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:12
155
SAMstats-L5064-HEK_ALX4_0.25_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:37
154
SAMstats-L5064-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:09
155
SAMstats-L5064-HEK_ALX4_0.25_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:11
155
SAMstats-L5065-HEK_ALX4_0.05_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5065-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:07
154
SAMstats-L5065-HEK_ALX4_0.05_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:09
154
SAMstats-L5066-HEK_SOX_ChIP.1x36mers.unique
2025-12-02 08:14
155
SAMstats-L5066-HEK_SOX_ChIP.2x36mers.unique
2025-12-02 12:21
156
SAMstats-L5066-HEK_SOX_ChIP.2x36mers.unique.dedup
2025-12-02 12:22
156
SAMstats-L5067-HEK_IRF4_ChIP.1x36mers.unique
2025-12-02 07:37
154
SAMstats-L5067-HEK_IRF4_ChIP.2x36mers.unique
2025-12-02 11:12
155
SAMstats-L5067-HEK_IRF4_ChIP.2x36mers.unique.dedup
2025-12-02 11:12
155
SAMstats-L5068-HEK_LEF1_ChIP.1x36mers.unique
2025-12-02 07:35
154
SAMstats-L5068-HEK_LEF1_ChIP.2x36mers.unique
2025-12-02 11:06
154
SAMstats-L5068-HEK_LEF1_ChIP.2x36mers.unique.dedup
2025-12-02 11:06
154
SAMstats-L5069-HEK_ALX4-FLAG_ChIP.1x36mers.unique
2025-12-02 07:34
154
SAMstats-L5069-HEK_ALX4-FLAG_ChIP.2x36mers.unique
2025-12-02 11:05
154
SAMstats-L5069-HEK_ALX4-FLAG_ChIP.2x36mers.unique.dedup
2025-12-02 11:05
154
SAMstats_ATAC.chrM.table
2025-12-02 05:43
281
SAMstats_ATAC.files
2025-12-02 05:37
1.2K
SAMstats_ATAC.table
2025-12-02 05:43
1.1K
SAMstats_ATAC.unique.dedup.table
2025-12-02 05:43
401
SAMstats_ATAC.unique.table
2025-12-02 05:43
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SAMstats_ATAC_Bacteroides.files
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SAMstats_ATAC_Bacteroides.table
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SampleSheet.csv
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all.251127_NB551514_0383_AH2JTFBGY2.fastq.lines
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makewiggle-stranded-2x36mers.sh
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map-1x36mers.sh
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map-2x36mers.sh
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run_spp.sh
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samtools-index-1x36mers.sh
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samtools-index-2x36mers.sh
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smith_waterman_test.ipynb
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wigtobigwig-wigplusminus-2x36mers.sh
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