python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3998-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3998-K562_KLF1-PA5-86441.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L3999-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3999-K562_KLF1-PA5-86441.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4000-K562_KLF1-NB100-1019.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4000-K562_KLF1-NB100-1019.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4001-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4001-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4002-K562_KLF1-H00010661.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4002-K562_KLF1-H00010661.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize