module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3998-K562_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3998-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3998-K562_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3999-K562_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3999-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3999-K562_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L4000-K562_KLF1-NB100-1019.2x36mers.unique.bam OUTPUT=L4000-K562_KLF1-NB100-1019.2x36mers.unique.dedup.bam METRICS_FILE=L4000-K562_KLF1-NB100-1019.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L4001-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.bam OUTPUT=L4001-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L4001-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L4002-K562_KLF1-H00010661.2x36mers.unique.bam OUTPUT=L4002-K562_KLF1-H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L4002-K562_KLF1-H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true