module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3818-B-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3818-B-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3818-B-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3819-B-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3819-B-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3819-B-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3820-B-O_NRSF1.2x36mers.unique.bam OUTPUT=L3820-B-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3820-B-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3821-B-O_NRSF1.2x36mers.unique.bam OUTPUT=L3821-B-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3821-B-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3822-U-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3822-U-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3822-U-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3823-U-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3823-U-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3823-U-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3824-U-O_NRSF1.2x36mers.unique.bam OUTPUT=L3824-U-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3824-U-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3825-U-O_NRSF1.2x36mers.unique.bam OUTPUT=L3825-U-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3825-U-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3969-K562_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3969-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3969-K562_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3970-K562_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3970-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3970-K562_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3971-K562_KLF1-NB100-1019.2x36mers.unique.bam OUTPUT=L3971-K562_KLF1-NB100-1019.2x36mers.unique.dedup.bam METRICS_FILE=L3971-K562_KLF1-NB100-1019.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3972-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.bam OUTPUT=L3972-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L3972-K562_KLF1-NB100-1019_H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3973-K562_KLF1-H00010661.2x36mers.unique.bam OUTPUT=L3973-K562_KLF1-H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L3973-K562_KLF1-H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3974-K562-Pol2-4H8.2x36mers.unique.bam OUTPUT=L3974-K562-Pol2-4H8.2x36mers.unique.dedup.bam METRICS_FILE=L3974-K562-Pol2-4H8.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3975-K562-H3K27ac.2x36mers.unique.bam OUTPUT=L3975-K562-H3K27ac.2x36mers.unique.dedup.bam METRICS_FILE=L3975-K562-H3K27ac.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true