/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3865-K562_200K_CseDa01old_SMF_10ul.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3866-K562_200K_CseDa01old_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3867-K562_200K_CseDa01new_SMF_5ul.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3868-K562_200K_CseDa01new_SMF_10ul.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3869-K562_200K_CseDa01new_SMF_5ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3870-K562_200K_CseDa01new_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3871-sperm_1_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3872-sperm_10_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3873-sperm_100_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam
/oak/stanford/groups/akundaje/marinovg/programs/MethylDackel/MethylDackel extract --CHH --CHG /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa L3874-sperm_1000_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38.bam