python ~/code/bedRPKMfromBAM.py L3847-K562_KLF1-PA5-86441.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3847-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3847-K562_KLF1-PA5-86441.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3849-K562_KLF1-NB100-1019.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3849-K562_KLF1-NB100-1019.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3849-K562_KLF1-NB100-1019.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3851-Julia1_KLF1-H00010661.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3851-Julia1_KLF1-H00010661.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3851-Julia1_KLF1-H00010661.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3852-Julia2_KLF1-H00010661.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3852-Julia2_KLF1-H00010661.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3852-Julia2_KLF1-H00010661.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM