module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3844-K562_Input.2x36mers.unique.bam OUTPUT=L3844-K562_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3844-K562_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3845-Julia1_Input.2x36mers.unique.bam OUTPUT=L3845-Julia1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3845-Julia1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3846-Julia2_Input.2x36mers.unique.bam OUTPUT=L3846-Julia2_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3846-Julia2_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3847-K562_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3847-K562_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3847-K562_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.bam OUTPUT=L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.dedup.bam METRICS_FILE=L3848-Julia1_KLF1-PA5-86441.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3849-K562_KLF1-NB100-1019.2x36mers.unique.bam OUTPUT=L3849-K562_KLF1-NB100-1019.2x36mers.unique.dedup.bam METRICS_FILE=L3849-K562_KLF1-NB100-1019.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.bam OUTPUT=L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.dedup.bam METRICS_FILE=L3850-Julia2_KLF1-NB100-1019.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3851-Julia1_KLF1-H00010661.2x36mers.unique.bam OUTPUT=L3851-Julia1_KLF1-H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L3851-Julia1_KLF1-H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3852-Julia2_KLF1-H00010661.2x36mers.unique.bam OUTPUT=L3852-Julia2_KLF1-H00010661.2x36mers.unique.dedup.bam METRICS_FILE=L3852-Julia2_KLF1-H00010661.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true