Index of /kundaje/marinovg/oak/various/ENCODE4/ChIP/2025-06-12-NextSeq-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2016-11-16-refFlat.TSS-profile-L3865-K562_200K_CseDa01old_SMF_10ul.2x38.bwameth.hg38_CHH2025-06-15 11:52 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3866-K562_200K_CseDa01old_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 11:57 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3867-K562_200K_CseDa01new_SMF_5ul.2x38.bwameth.hg38_CHH2025-06-15 11:50 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3868-K562_200K_CseDa01new_SMF_10ul.2x38.bwameth.hg38_CHH2025-06-15 11:59 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3869-K562_200K_CseDa01new_SMF_5ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 11:53 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3870-K562_200K_CseDa01new_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:03 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3871-sperm_1_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:08 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3872-sperm_10_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:07 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3873-sperm_100_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:04 99K 
[ ]2016-11-16-refFlat.TSS-profile-L3874-sperm_1000_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:16 102K 
[ ]2016-11-16-refFlat.TSS-profile-L3875-L_biflexa_LEPBIa2710_mutant_1_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3876-L_biflexa_wt_1_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3877-L_biflexa_LEPBIa2710_mutant_10_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3878-L_biflexa_wt_10_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3879-L_biflexa_LEPBIa2710_mutant_100_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[ ]2016-11-16-refFlat.TSS-profile-L3880-L_biflexa_wt_100_CseDa01_SMF.2x38.bwameth.Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris-ASM1768v1_CHH2025-06-16 13:48 98K 
[TXT]ATACTSSscore-Leptospira.txt2025-06-16 16:13 3.0K 
[ ]GM12878-KLF5-ENCFF992IBT.bed.gz2020-12-08 13:11 188K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3865-K562_200K_CseDa01old_SMF_10ul.2x38.bwameth.hg38_CHH2025-06-15 11:52 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3866-K562_200K_CseDa01old_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 11:57 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3867-K562_200K_CseDa01new_SMF_5ul.2x38.bwameth.hg38_CHH2025-06-15 11:50 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3868-K562_200K_CseDa01new_SMF_10ul.2x38.bwameth.hg38_CHH2025-06-15 11:59 99K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3869-K562_200K_CseDa01new_SMF_5ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 11:57 98K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3870-K562_200K_CseDa01new_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:03 100K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3871-sperm_1_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:13 101K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3872-sperm_10_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:11 101K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3873-sperm_100_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:09 101K 
[ ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3874-sperm_1000_CseDa01_SMF_10ul_ZnCl2.2x38.bwameth.hg38_CHH2025-06-15 12:22 102K 
[ ]MACS2025-06-16 16:40 424  
[ ]MACS-region-stats2025-06-16 16:40 537  
[TXT]MarkDuplicates.sh2025-06-13 13:25 3.2K 
[TXT]PEInsertDistFromBAM-2x36mers.sh2025-06-13 13:25 2.4K 
[ ]SAMstats-files.tar.gz2025-06-16 16:43 4.3K 
[ ]SAMstats_CseDa01.files2025-06-16 13:22 2.0K 
[ ]SAMstats_CseDa01.table2025-06-16 13:24 1.4K 
[ ]SAMstats_Leptospira.dedup.table2025-06-16 16:14 1.0K 
[ ]SAMstats_Leptospira.files2025-06-16 16:13 2.7K 
[ ]SAMstats_Leptospira.table2025-06-16 16:14 2.1K 
[ ]SAMstats_Leptospira.unique.table2025-06-16 16:14 1.1K 
[TXT]SampleSheet.csv2025-06-12 22:52 2.8K 
[ ]all.250612_NB551514_0305_AH3YCCBGYX.fastq.lines2025-06-13 15:46 11  
[TXT]bedRPKMfromBAM.sh2025-06-14 07:32 1.8K 
[ ]config2025-06-13 13:24 2.7K 
[TXT]macs2.sh2025-06-13 19:02 1.5K 
[TXT]makewiggle-stranded-2x36mers.sh2025-06-13 13:25 5.1K 
[TXT]map-1x36mers.sh2025-06-13 13:25 5.8K 
[TXT]map-2x36mers.sh2025-06-13 13:25 6.7K 
[DIR]pdf/2025-06-16 16:44 -  
[TXT]run_spp.sh2025-06-13 13:25 1.4K 
[TXT]samtools-index-1x36mers.sh2025-06-13 13:25 1.1K 
[TXT]samtools-index-2x36mers.sh2025-06-13 13:25 2.2K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3844-K562_Input.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3844-K562_Input.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3845-Julia1_Input.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3845-Julia1_Input.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3846-Julia2_Input.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3846-Julia2_Input.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3847-K562_KLF1-PA5-86441.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3847-K562_KLF1-PA5-86441.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3848-Julia1_KLF1-PA5-86441.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3848-Julia1_KLF1-PA5-86441.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3849-K562_KLF1-NB100-1019.minus2025-06-16 17:08 43K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3849-K562_KLF1-NB100-1019.plus2025-06-16 17:08 41K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3850-Julia2_KLF1-NB100-1019.minus2025-06-16 17:08 43K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3850-Julia2_KLF1-NB100-1019.plus2025-06-16 17:08 41K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3851-Julia1_KLF1-H00010661.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3851-Julia1_KLF1-H00010661.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3852-Julia2_KLF1-H00010661.minus2025-06-16 17:08 42K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT-L3852-Julia2_KLF1-H00010661.plus2025-06-16 17:08 40K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT.files2025-06-16 17:07 2.3K 
[ ]signal-around-GM12878-KLF5-ENCFF992IBT.table2025-06-16 17:13 591K 
[TXT]wigtobigwig-wigplusminus-2x36mers.sh2025-06-13 13:25 4.7K 
[ ]z2025-06-16 17:06 4.9K 
[ ]zz2025-06-14 07:33 2.2K 
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