Rscript ~/code/spp/spp_package/run_spp.R -c=L3790-Julia_1_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3790-Julia_1_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3791-Julia_2_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3791-Julia_2_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3792-Julia_3_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3792-Julia_3_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3793-Julia_4_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3793-Julia_4_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3794-Julia_5_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3794-Julia_5_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3795-Julia_6_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3795-Julia_6_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3796-Julia_7_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3796-Julia_7_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3797-Julia_8_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3797-Julia_8_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3798-Julia_9_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3798-Julia_9_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3799-Julia_10_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3799-Julia_10_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3800-Julia_11_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3800-Julia_11_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3801-Julia_12_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3801-Julia_12_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3802-B-HP_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3802-B-HP_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3803-B-O_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3803-B-O_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3804-U-HP_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3804-U-HP_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3805-U-O_Input.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3805-U-O_Input.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3806-Julia_1_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3806-Julia_1_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3807-Julia_2_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3807-Julia_2_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3808-Julia_3_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3808-Julia_3_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3809-Julia_4_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3809-Julia_4_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3810-Julia_5_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3810-Julia_5_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3811-Julia_6_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3811-Julia_6_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3812-Julia_7_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3812-Julia_7_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3813-Julia_8_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3813-Julia_8_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3814-Julia_9_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3814-Julia_9_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3815-Julia_10_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3815-Julia_10_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3816-Julia_11_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3816-Julia_11_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3817-Julia_12_KLF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3817-Julia_12_KLF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3818-B-HP_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3818-B-HP_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3819-B-HP_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3819-B-HP_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3820-B-O_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3820-B-O_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3821-B-O_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3821-B-O_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3822-U-HP_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3822-U-HP_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3823-U-HP_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3823-U-HP_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3824-U-O_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3824-U-O_NRSF1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=L3825-U-O_NRSF1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=L3825-U-O_NRSF1.1x36mers.QC