python ~/code/bedRPKMfromBAM.py L3806-Julia_1_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3806-Julia_1_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3806-Julia_1_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3807-Julia_2_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3807-Julia_2_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3807-Julia_2_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3808-Julia_3_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3808-Julia_3_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3808-Julia_3_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3809-Julia_4_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3809-Julia_4_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3809-Julia_4_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3810-Julia_5_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3810-Julia_5_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3810-Julia_5_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3811-Julia_6_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3811-Julia_6_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3811-Julia_6_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3812-Julia_7_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3812-Julia_7_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3812-Julia_7_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3813-Julia_8_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3813-Julia_8_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3813-Julia_8_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3814-Julia_9_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3814-Julia_9_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3814-Julia_9_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3815-Julia_10_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3815-Julia_10_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3815-Julia_10_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3816-Julia_11_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3816-Julia_11_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3816-Julia_11_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3817-Julia_12_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3817-Julia_12_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3817-Julia_12_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3818-B-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3818-B-HP_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3818-B-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3819-B-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3819-B-HP_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3819-B-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3820-B-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3820-B-O_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3820-B-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3821-B-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3821-B-O_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3821-B-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3822-U-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3822-U-HP_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3822-U-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3823-U-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3823-U-HP_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3823-U-HP_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3824-U-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3824-U-O_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3824-U-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3825-U-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3825-U-O_NRSF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3825-U-O_NRSF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM