module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3790-Julia_1_Input.2x36mers.unique.bam OUTPUT=L3790-Julia_1_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3790-Julia_1_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3791-Julia_2_Input.2x36mers.unique.bam OUTPUT=L3791-Julia_2_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3791-Julia_2_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3792-Julia_3_Input.2x36mers.unique.bam OUTPUT=L3792-Julia_3_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3792-Julia_3_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3793-Julia_4_Input.2x36mers.unique.bam OUTPUT=L3793-Julia_4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3793-Julia_4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3794-Julia_5_Input.2x36mers.unique.bam OUTPUT=L3794-Julia_5_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3794-Julia_5_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3795-Julia_6_Input.2x36mers.unique.bam OUTPUT=L3795-Julia_6_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3795-Julia_6_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3796-Julia_7_Input.2x36mers.unique.bam OUTPUT=L3796-Julia_7_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3796-Julia_7_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3797-Julia_8_Input.2x36mers.unique.bam OUTPUT=L3797-Julia_8_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3797-Julia_8_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3798-Julia_9_Input.2x36mers.unique.bam OUTPUT=L3798-Julia_9_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3798-Julia_9_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3799-Julia_10_Input.2x36mers.unique.bam OUTPUT=L3799-Julia_10_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3799-Julia_10_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3800-Julia_11_Input.2x36mers.unique.bam OUTPUT=L3800-Julia_11_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3800-Julia_11_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3801-Julia_12_Input.2x36mers.unique.bam OUTPUT=L3801-Julia_12_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3801-Julia_12_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3802-B-HP_Input.2x36mers.unique.bam OUTPUT=L3802-B-HP_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3802-B-HP_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3803-B-O_Input.2x36mers.unique.bam OUTPUT=L3803-B-O_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3803-B-O_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3804-U-HP_Input.2x36mers.unique.bam OUTPUT=L3804-U-HP_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3804-U-HP_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3805-U-O_Input.2x36mers.unique.bam OUTPUT=L3805-U-O_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3805-U-O_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3806-Julia_1_KLF1.2x36mers.unique.bam OUTPUT=L3806-Julia_1_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3806-Julia_1_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3807-Julia_2_KLF1.2x36mers.unique.bam OUTPUT=L3807-Julia_2_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3807-Julia_2_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3808-Julia_3_KLF1.2x36mers.unique.bam OUTPUT=L3808-Julia_3_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3808-Julia_3_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3809-Julia_4_KLF1.2x36mers.unique.bam OUTPUT=L3809-Julia_4_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3809-Julia_4_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3810-Julia_5_KLF1.2x36mers.unique.bam OUTPUT=L3810-Julia_5_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3810-Julia_5_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3811-Julia_6_KLF1.2x36mers.unique.bam OUTPUT=L3811-Julia_6_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3811-Julia_6_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3812-Julia_7_KLF1.2x36mers.unique.bam OUTPUT=L3812-Julia_7_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3812-Julia_7_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3813-Julia_8_KLF1.2x36mers.unique.bam OUTPUT=L3813-Julia_8_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3813-Julia_8_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3814-Julia_9_KLF1.2x36mers.unique.bam OUTPUT=L3814-Julia_9_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3814-Julia_9_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3815-Julia_10_KLF1.2x36mers.unique.bam OUTPUT=L3815-Julia_10_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3815-Julia_10_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3816-Julia_11_KLF1.2x36mers.unique.bam OUTPUT=L3816-Julia_11_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3816-Julia_11_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3817-Julia_12_KLF1.2x36mers.unique.bam OUTPUT=L3817-Julia_12_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3817-Julia_12_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3818-B-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3818-B-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3818-B-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3819-B-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3819-B-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3819-B-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3820-B-O_NRSF1.2x36mers.unique.bam OUTPUT=L3820-B-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3820-B-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3821-B-O_NRSF1.2x36mers.unique.bam OUTPUT=L3821-B-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3821-B-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3822-U-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3822-U-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3822-U-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3823-U-HP_NRSF1.2x36mers.unique.bam OUTPUT=L3823-U-HP_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3823-U-HP_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3824-U-O_NRSF1.2x36mers.unique.bam OUTPUT=L3824-U-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3824-U-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3825-U-O_NRSF1.2x36mers.unique.bam OUTPUT=L3825-U-O_NRSF1.2x36mers.unique.dedup.bam METRICS_FILE=L3825-U-O_NRSF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true