python ~/code/bedRPKMfromBAM.py L3748-GFP_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3748-GFP_ATF4.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3748-GFP_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3749-GFP_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3749-GFP_ATF4.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3749-GFP_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3750-ATF4_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3750-ATF4_ATF4.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3750-ATF4_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3751-ATF4_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3751-ATF4_ATF4.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3751-ATF4_ATF4.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3760-K562_1pFA_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3760-K562_1pFA_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3760-K562_1pFA_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3761-K562_1pFA_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.narrowPeak.gz 0 L3761-K562_1pFA_KLF1.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3761-K562_1pFA_KLF1.2x36mers.unique.dedup.MACS-2.1.0_peaks.RPM -RPM