module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3748-GFP_ATF4.2x36mers.unique.bam OUTPUT=L3748-GFP_ATF4.2x36mers.unique.dedup.bam METRICS_FILE=L3748-GFP_ATF4.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3749-GFP_ATF4.2x36mers.unique.bam OUTPUT=L3749-GFP_ATF4.2x36mers.unique.dedup.bam METRICS_FILE=L3749-GFP_ATF4.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3750-ATF4_ATF4.2x36mers.unique.bam OUTPUT=L3750-ATF4_ATF4.2x36mers.unique.dedup.bam METRICS_FILE=L3750-ATF4_ATF4.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3751-ATF4_ATF4.2x36mers.unique.bam OUTPUT=L3751-ATF4_ATF4.2x36mers.unique.dedup.bam METRICS_FILE=L3751-ATF4_ATF4.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.bam OUTPUT=L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3752-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.bam OUTPUT=L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3753-Hanbang_Zhan_U-HP_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.bam OUTPUT=L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3754-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.bam OUTPUT=L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3755-Hanbang_Zhan_U-O_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.bam OUTPUT=L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3756-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.bam OUTPUT=L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3757-Hanbang_Zhan_B-HP_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.bam OUTPUT=L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3758-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.bam OUTPUT=L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L3759-Hanbang_Zhan_B-O_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3760-K562_1pFA_KLF1.2x36mers.unique.bam OUTPUT=L3760-K562_1pFA_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3760-K562_1pFA_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3761-K562_1pFA_KLF1.2x36mers.unique.bam OUTPUT=L3761-K562_1pFA_KLF1.2x36mers.unique.dedup.bam METRICS_FILE=L3761-K562_1pFA_KLF1.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3764-K562_1pFA_Input.2x36mers.unique.bam OUTPUT=L3764-K562_1pFA_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3764-K562_1pFA_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3765-GFP_Input.2x36mers.unique.bam OUTPUT=L3765-GFP_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3765-GFP_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3766-ATF4_Input.2x36mers.unique.bam OUTPUT=L3766-ATF4_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3766-ATF4_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3767-Hanbang_Zhan_U-HP_Input.2x36mers.unique.bam OUTPUT=L3767-Hanbang_Zhan_U-HP_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3767-Hanbang_Zhan_U-HP_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3768-Hanbang_Zhan_U-O_Input.2x36mers.unique.bam OUTPUT=L3768-Hanbang_Zhan_U-O_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3768-Hanbang_Zhan_U-O_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3769-Hanbang_Zhan_B-HP_Input.2x36mers.unique.bam OUTPUT=L3769-Hanbang_Zhan_B-HP_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3769-Hanbang_Zhan_B-HP_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L3770-Hanbang_Zhan_B-O_Input.2x36mers.unique.bam OUTPUT=L3770-Hanbang_Zhan_B-O_Input.2x36mers.unique.dedup.bam METRICS_FILE=L3770-Hanbang_Zhan_B-O_Input.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true