python ~/code/BAMPseudoReps-V2.py CCDC17-rep1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa
python ~/code/BAMPseudoReps-V2.py CCDC6-rep1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa
python ~/code/BAMPseudoReps-V2.py CEBPD-rep1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa
python ~/code/BAMPseudoReps-V2.py E2F1-rep1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38.fa