## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12155810	0	0	1565943	1232455	0.128823	175236565

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.108964
2.0	2.143609
3.0	3.108915
4.0	4.009529
5.0	4.849788
6.0	5.633735
7.0	6.365144
8.0	7.047537
9.0	7.684198
10.0	8.278192
11.0	8.832379
12.0	9.349426
13.0	9.831822
14.0	10.281889
15.0	10.701794
16.0	11.093559
17.0	11.459069
18.0	11.800084
19.0	12.118245
20.0	12.415084
21.0	12.692029
22.0	12.950415
23.0	13.191484
24.0	13.416398
25.0	13.626239
26.0	13.822017
27.0	14.004675
28.0	14.175091
29.0	14.334087
30.0	14.482427
31.0	14.620826
32.0	14.74995
33.0	14.870421
34.0	14.982818
35.0	15.087683
36.0	15.185519
37.0	15.2768
38.0	15.361962
39.0	15.441418
40.0	15.515549
41.0	15.584711
42.0	15.649239
43.0	15.709442
44.0	15.765611
45.0	15.818015
46.0	15.866907
47.0	15.912523
48.0	15.955082
49.0	15.994789
50.0	16.031834
51.0	16.066397
52.0	16.098644
53.0	16.128729
54.0	16.156799
55.0	16.182987
56.0	16.20742
57.0	16.230216
58.0	16.251484
59.0	16.271327
60.0	16.289839
61.0	16.307112
62.0	16.323226
63.0	16.338261
64.0	16.352288
65.0	16.365375
66.0	16.377586
67.0	16.388977
68.0	16.399606
69.0	16.409522
70.0	16.418773
71.0	16.427405
72.0	16.435458
73.0	16.442971
74.0	16.449981
75.0	16.456521
76.0	16.462623
77.0	16.468316
78.0	16.473627
79.0	16.478583
80.0	16.483206
81.0	16.487519
82.0	16.491544
83.0	16.495298
84.0	16.498802
85.0	16.50207
86.0	16.505119
87.0	16.507964
88.0	16.510618
89.0	16.513095
90.0	16.515405
91.0	16.517561
92.0	16.519572
93.0	16.521448
94.0	16.523199
95.0	16.524832
96.0	16.526356
97.0	16.527778
98.0	16.529104
99.0	16.530341
100.0	16.531496