## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	30524433	0	0	5168623	3597637	0.169327	221697762

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.124644
2.0	2.104629
3.0	2.958562
4.0	3.702656
5.0	4.35104
6.0	4.916024
7.0	5.408336
8.0	5.837323
9.0	6.211132
10.0	6.536858
11.0	6.820688
12.0	7.068009
13.0	7.283518
14.0	7.471307
15.0	7.634941
16.0	7.777528
17.0	7.901774
18.0	8.010038
19.0	8.104377
20.0	8.186582
21.0	8.258212
22.0	8.32063
23.0	8.375018
24.0	8.422411
25.0	8.463708
26.0	8.499693
27.0	8.531049
28.0	8.558372
29.0	8.58218
30.0	8.602927
31.0	8.621004
32.0	8.636757
33.0	8.650483
34.0	8.662443
35.0	8.672866
36.0	8.681947
37.0	8.689861
38.0	8.696756
39.0	8.702765
40.0	8.708001
41.0	8.712563
42.0	8.716538
43.0	8.720003
44.0	8.723021
45.0	8.725651
46.0	8.727943
47.0	8.72994
48.0	8.731681
49.0	8.733197
50.0	8.734518
51.0	8.73567
52.0	8.736673
53.0	8.737547
54.0	8.738309
55.0	8.738973
56.0	8.739551
57.0	8.740055
58.0	8.740495
59.0	8.740877
60.0	8.741211
61.0	8.741501
62.0	8.741755
63.0	8.741975
64.0	8.742167
65.0	8.742335
66.0	8.742481
67.0	8.742608
68.0	8.742719
69.0	8.742816
70.0	8.7429
71.0	8.742973
72.0	8.743037
73.0	8.743093
74.0	8.743141
75.0	8.743184
76.0	8.74322
77.0	8.743252
78.0	8.74328
79.0	8.743305
80.0	8.743326
81.0	8.743345
82.0	8.743361
83.0	8.743375
84.0	8.743387
85.0	8.743398
86.0	8.743407
87.0	8.743415
88.0	8.743422
89.0	8.743428
90.0	8.743434
91.0	8.743438
92.0	8.743442
93.0	8.743446
94.0	8.743449
95.0	8.743452
96.0	8.743454
97.0	8.743456
98.0	8.743458
99.0	8.743459
100.0	8.743461