## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:04 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15219180	0	0	2574663	2037391	0.169172	157280949

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.147219
2.0	2.18863
3.0	3.133991
4.0	3.992162
5.0	4.771184
6.0	5.478356
7.0	6.120306
8.0	6.703049
9.0	7.232046
10.0	7.712253
11.0	8.14817
12.0	8.543883
13.0	8.903099
14.0	9.229185
15.0	9.525196
16.0	9.793905
17.0	10.037832
18.0	10.259261
19.0	10.460268
20.0	10.642736
21.0	10.808375
22.0	10.958737
23.0	11.095231
24.0	11.219136
25.0	11.331614
26.0	11.433717
27.0	11.526404
28.0	11.610542
29.0	11.68692
30.0	11.756254
31.0	11.819193
32.0	11.876327
33.0	11.928192
34.0	11.975273
35.0	12.018012
36.0	12.056809
37.0	12.092028
38.0	12.123999
39.0	12.153021
40.0	12.179366
41.0	12.203281
42.0	12.224991
43.0	12.244699
44.0	12.262588
45.0	12.278828
46.0	12.29357
47.0	12.306953
48.0	12.319101
49.0	12.330128
50.0	12.340139
51.0	12.349226
52.0	12.357476
53.0	12.364964
54.0	12.371762
55.0	12.377932
56.0	12.383534
57.0	12.388619
58.0	12.393235
59.0	12.397425
60.0	12.401229
61.0	12.404682
62.0	12.407817
63.0	12.410662
64.0	12.413245
65.0	12.41559
66.0	12.417718
67.0	12.419651
68.0	12.421405
69.0	12.422997
70.0	12.424442
71.0	12.425754
72.0	12.426945
73.0	12.428026
74.0	12.429008
75.0	12.429899
76.0	12.430708
77.0	12.431442
78.0	12.432108
79.0	12.432713
80.0	12.433262
81.0	12.433761
82.0	12.434214
83.0	12.434624
84.0	12.434997
85.0	12.435336
86.0	12.435643
87.0	12.435922
88.0	12.436175
89.0	12.436405
90.0	12.436614
91.0	12.436803
92.0	12.436975
93.0	12.437132
94.0	12.437273
95.0	12.437402
96.0	12.437519
97.0	12.437625
98.0	12.437721
99.0	12.437808
100.0	12.437888