## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:04 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17145320	0	0	2365053	1834729	0.137942	215876810

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.115145
2.0	2.145148
3.0	3.096512
4.0	3.975239
5.0	4.786875
6.0	5.536543
7.0	6.228974
8.0	6.868538
9.0	7.459272
10.0	8.004903
11.0	8.508876
12.0	8.97437
13.0	9.404324
14.0	9.801451
15.0	10.168258
16.0	10.507059
17.0	10.819992
18.0	11.109033
19.0	11.376006
20.0	11.622596
21.0	11.850359
22.0	12.060732
23.0	12.255043
24.0	12.434518
25.0	12.600291
26.0	12.753407
27.0	12.894832
28.0	13.02546
29.0	13.146114
30.0	13.257557
31.0	13.360491
32.0	13.455565
33.0	13.543381
34.0	13.624492
35.0	13.699411
36.0	13.768609
37.0	13.832524
38.0	13.891559
39.0	13.946087
40.0	13.996452
41.0	14.042971
42.0	14.085939
43.0	14.125626
44.0	14.162283
45.0	14.196141
46.0	14.227414
47.0	14.2563
48.0	14.28298
49.0	14.307623
50.0	14.330384
51.0	14.351408
52.0	14.370827
53.0	14.388763
54.0	14.405329
55.0	14.420631
56.0	14.434764
57.0	14.447819
58.0	14.459876
59.0	14.471013
60.0	14.4813
61.0	14.490801
62.0	14.499577
63.0	14.507683
64.0	14.51517
65.0	14.522085
66.0	14.528473
67.0	14.534373
68.0	14.539822
69.0	14.544855
70.0	14.549504
71.0	14.553798
72.0	14.557764
73.0	14.561427
74.0	14.564811
75.0	14.567936
76.0	14.570823
77.0	14.573489
78.0	14.575952
79.0	14.578227
80.0	14.580328
81.0	14.582268
82.0	14.584061
83.0	14.585716
84.0	14.587245
85.0	14.588658
86.0	14.589963
87.0	14.591167
88.0	14.59228
89.0	14.593308
90.0	14.594258
91.0	14.595135
92.0	14.595945
93.0	14.596693
94.0	14.597384
95.0	14.598023
96.0	14.598612
97.0	14.599157
98.0	14.59966
99.0	14.600124
100.0	14.600554