SUMMARISING RUN PARAMETERS
==========================
Input filename: A-15173-2.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-15173-2.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 894.47 s (37 us/read; 1.64 M reads/minute).

=== Summary ===

Total reads processed:              24,422,282
Reads with adapters:                 9,569,245 (39.2%)
Reads written (passing filters):    24,422,282 (100.0%)

Total basepairs processed: 1,567,897,430 bp
Quality-trimmed:                  11,217 bp (0.0%)
Total written (filtered):  1,551,355,876 bp (98.9%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 9569245 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 27.6%
  C: 27.5%
  G: 22.9%
  T: 22.1%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	7483108	6105570.5	0	7483108
2	1426349	1526392.6	0	1426349
3	379380	381598.2	0	379380
4	83713	95399.5	0	83713
5	21256	23849.9	0	21256
6	11564	5962.5	0	11564
7	4498	1490.6	0	4498
8	3540	372.7	0	3540
9	3597	93.2	0	2814 783
10	3673	23.3	1	2601 1072
11	4163	5.8	1	2670 1493
12	3540	1.5	1	2792 748
13	3471	1.5	1	2924 547
14	4157	1.5	1	2640 1517
15	3740	1.5	1	2426 1314
16	2937	1.5	1	2303 634
17	2869	1.5	1	2278 591
18	2832	1.5	1	2636 196
19	3314	1.5	1	2911 403
20	3722	1.5	1	3289 433
21	4053	1.5	1	3798 255
22	5425	1.5	1	4243 1182
23	5633	1.5	1	5331 302
24	5589	1.5	1	5246 343
25	4608	1.5	1	4411 197
26	3537	1.5	1	3294 243
27	3486	1.5	1	3161 325
28	3799	1.5	1	3455 344
29	4464	1.5	1	4147 317
30	4950	1.5	1	4746 204
31	4814	1.5	1	4588 226
32	5083	1.5	1	4848 235
33	7156	1.5	1	6816 340
34	7648	1.5	1	7409 239
35	6749	1.5	1	6536 213
36	4932	1.5	1	4699 233
37	4023	1.5	1	3846 177
38	3870	1.5	1	3594 276
39	3701	1.5	1	3509 192
40	2360	1.5	1	2157 203
41	1304	1.5	1	1136 168
42	783	1.5	1	660 123
43	990	1.5	1	480 510
44	451	1.5	1	279 172
45	739	1.5	1	331 408
46	564	1.5	1	297 267
47	506	1.5	1	315 191
48	859	1.5	1	489 370
49	1292	1.5	1	1045 247
50	1907	1.5	1	116 1791
51	362	1.5	1	34 328
52	276	1.5	1	8 268
53	482	1.5	1	6 476
54	148	1.5	1	9 139
55	488	1.5	1	3 485
56	244	1.5	1	4 240
57	196	1.5	1	0 196
58	437	1.5	1	3 434
59	296	1.5	1	0 296
60	1164	1.5	1	0 1164
61	169	1.5	1	1 168
62	220	1.5	1	16 204
63	408	1.5	1	3 405
64	118	1.5	1	5 113
65	147	1.5	1	4 143
66	157	1.5	1	1 156
67	268	1.5	1	2 266
68	405	1.5	1	4 401
69	65	1.5	1	3 62
70	91	1.5	1	3 88
71	50	1.5	1	3 47
72	84	1.5	1	9 75
73	420	1.5	1	11 409
74	128	1.5	1	40 88
75	1672	1.5	1	1501 171
76	52	1.5	1	1 51


RUN STATISTICS FOR INPUT FILE: A-15173-2.end1.fastq.gz
=============================================
24422282 sequences processed in total