SUMMARISING RUN PARAMETERS
==========================
Input filename: A-15173-1.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-15173-1.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 1117.08 s (36 us/read; 1.65 M reads/minute).

=== Summary ===

Total reads processed:              30,709,434
Reads with adapters:                11,974,401 (39.0%)
Reads written (passing filters):    30,709,434 (100.0%)

Total basepairs processed: 1,983,389,762 bp
Quality-trimmed:                  10,880 bp (0.0%)
Total written (filtered):  1,964,211,786 bp (99.0%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 11974401 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 27.5%
  C: 27.4%
  G: 23.0%
  T: 22.1%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	9386372	7677358.5	0	9386372
2	1812681	1919339.6	0	1812681
3	482391	479834.9	0	482391
4	105921	119958.7	0	105921
5	26354	29989.7	0	26354
6	14541	7497.4	0	14541
7	4766	1874.4	0	4766
8	3670	468.6	0	3670
9	3629	117.1	0	2687 942
10	3479	29.3	1	2238 1241
11	4103	7.3	1	2311 1792
12	3466	1.8	1	2541 925
13	3276	1.8	1	2509 767
14	4005	1.8	1	2253 1752
15	3396	1.8	1	1965 1431
16	2620	1.8	1	1908 712
17	2658	1.8	1	1956 702
18	2380	1.8	1	2136 244
19	2939	1.8	1	2406 533
20	3329	1.8	1	2762 567
21	3510	1.8	1	3215 295
22	5036	1.8	1	3698 1338
23	4980	1.8	1	4650 330
24	4981	1.8	1	4590 391
25	3776	1.8	1	3573 203
26	2891	1.8	1	2599 292
27	2979	1.8	1	2495 484
28	3069	1.8	1	2703 366
29	3555	1.8	1	3197 358
30	4014	1.8	1	3754 260
31	3945	1.8	1	3732 213
32	4149	1.8	1	3921 228
33	5900	1.8	1	5486 414
34	6415	1.8	1	6156 259
35	5384	1.8	1	5163 221
36	3767	1.8	1	3510 257
37	3104	1.8	1	2896 208
38	3223	1.8	1	2896 327
39	2625	1.8	1	2414 211
40	1892	1.8	1	1642 250
41	1061	1.8	1	840 221
42	687	1.8	1	505 182
43	1069	1.8	1	436 633
44	420	1.8	1	204 216
45	707	1.8	1	204 503
46	519	1.8	1	216 303
47	427	1.8	1	189 238
48	767	1.8	1	312 455
49	829	1.8	1	591 238
50	2310	1.8	1	58 2252
51	485	1.8	1	18 467
52	343	1.8	1	6 337
53	657	1.8	1	1 656
54	157	1.8	1	1 156
55	666	1.8	1	3 663
56	273	1.8	1	3 270
57	207	1.8	1	2 205
58	559	1.8	1	0 559
59	382	1.8	1	2 380
60	1506	1.8	1	3 1503
61	253	1.8	1	1 252
62	301	1.8	1	19 282
63	623	1.8	1	3 620
64	145	1.8	1	7 138
65	156	1.8	1	2 154
66	205	1.8	1	4 201
67	289	1.8	1	2 287
68	563	1.8	1	10 553
69	113	1.8	1	4 109
70	86	1.8	1	2 84
71	66	1.8	1	5 61
72	113	1.8	1	9 104
73	529	1.8	1	12 517
74	161	1.8	1	30 131
75	1519	1.8	1	1261 258
76	77	1.8	1	5 72


RUN STATISTICS FOR INPUT FILE: A-15173-1.end1.fastq.gz
=============================================
30709434 sequences processed in total