SUMMARISING RUN PARAMETERS
==========================
Input filename: A-15171-2.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-15171-2.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 917.36 s (36 us/read; 1.66 M reads/minute).

=== Summary ===

Total reads processed:              25,447,185
Reads with adapters:                10,052,010 (39.5%)
Reads written (passing filters):    25,447,185 (100.0%)

Total basepairs processed: 1,626,786,722 bp
Quality-trimmed:                  13,054 bp (0.0%)
Total written (filtered):  1,609,015,363 bp (98.9%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 10052010 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 27.6%
  C: 27.7%
  G: 22.9%
  T: 21.8%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	7881781	6361796.2	0	7881781
2	1476220	1590449.1	0	1476220
3	385108	397612.3	0	385108
4	85123	99403.1	0	85123
5	21558	24850.8	0	21558
6	11952	6212.7	0	11952
7	4882	1553.2	0	4882
8	4281	388.3	0	4281
9	4144	97.1	0	3410 734
10	4069	24.3	1	3074 995
11	4786	6.1	1	3224 1562
12	4254	1.5	1	3441 813
13	4231	1.5	1	3602 629
14	4700	1.5	1	3216 1484
15	4295	1.5	1	2882 1413
16	3522	1.5	1	2781 741
17	3499	1.5	1	2855 644
18	3296	1.5	1	3101 195
19	3967	1.5	1	3506 461
20	4334	1.5	1	3836 498
21	4816	1.5	1	4559 257
22	6189	1.5	1	4981 1208
23	6388	1.5	1	6038 350
24	6229	1.5	1	5849 380
25	5340	1.5	1	5112 228
26	4187	1.5	1	3965 222
27	4293	1.5	1	3884 409
28	4478	1.5	1	4117 361
29	5416	1.5	1	5084 332
30	5849	1.5	1	5599 250
31	5690	1.5	1	5484 206
32	5980	1.5	1	5751 229
33	8201	1.5	1	7880 321
34	8599	1.5	1	8354 245
35	7836	1.5	1	7613 223
36	5916	1.5	1	5666 250
37	4861	1.5	1	4689 172
38	4823	1.5	1	4522 301
39	4599	1.5	1	4395 204
40	2901	1.5	1	2689 212
41	1568	1.5	1	1408 160
42	916	1.5	1	775 141
43	1124	1.5	1	629 495
44	456	1.5	1	303 153
45	810	1.5	1	366 444
46	626	1.5	1	357 269
47	516	1.5	1	320 196
48	949	1.5	1	534 415
49	1256	1.5	1	1009 247
50	2164	1.5	1	120 2044
51	423	1.5	1	24 399
52	270	1.5	1	10 260
53	559	1.5	1	6 553
54	123	1.5	1	4 119
55	481	1.5	1	5 476
56	235	1.5	1	1 234
57	210	1.5	1	6 204
58	411	1.5	1	0 411
59	323	1.5	1	1 322
60	1332	1.5	1	2 1330
61	184	1.5	1	2 182
62	239	1.5	1	18 221
63	441	1.5	1	1 440
64	128	1.5	1	10 118
65	146	1.5	1	6 140
66	135	1.5	1	4 131
67	247	1.5	1	4 243
68	417	1.5	1	3 414
69	87	1.5	1	3 84
70	88	1.5	1	6 82
71	45	1.5	1	5 40
72	86	1.5	1	11 75
73	439	1.5	1	10 429
74	143	1.5	1	46 97
75	1775	1.5	1	1573 202
76	65	1.5	1	1 64


RUN STATISTICS FOR INPUT FILE: A-15171-2.end1.fastq.gz
=============================================
25447185 sequences processed in total