SUMMARISING RUN PARAMETERS
==========================
Input filename: A-13189-2.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-13189-2.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 904.74 s (36 us/read; 1.68 M reads/minute).

=== Summary ===

Total reads processed:              25,336,192
Reads with adapters:                 9,921,202 (39.2%)
Reads written (passing filters):    25,336,192 (100.0%)

Total basepairs processed: 1,637,479,649 bp
Quality-trimmed:                  12,294 bp (0.0%)
Total written (filtered):  1,620,622,234 bp (99.0%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 9921202 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 27.2%
  C: 27.9%
  G: 23.0%
  T: 21.9%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	7760883	6334048.0	0	7760883
2	1490069	1583512.0	0	1490069
3	390659	395878.0	0	390659
4	87317	98969.5	0	87317
5	22071	24742.4	0	22071
6	12207	6185.6	0	12207
7	4585	1546.4	0	4585
8	3709	386.6	0	3709
9	3612	96.6	0	2883 729
10	3548	24.2	1	2532 1016
11	4202	6.0	1	2699 1503
12	3589	1.5	1	2785 804
13	3535	1.5	1	2891 644
14	3953	1.5	1	2615 1338
15	3556	1.5	1	2386 1170
16	2732	1.5	1	2183 549
17	2749	1.5	1	2165 584
18	2679	1.5	1	2484 195
19	3221	1.5	1	2819 402
20	3409	1.5	1	2977 432
21	3728	1.5	1	3472 256
22	5305	1.5	1	4178 1127
23	5187	1.5	1	4897 290
24	5229	1.5	1	4913 316
25	4196	1.5	1	3988 208
26	3362	1.5	1	3093 269
27	3374	1.5	1	2984 390
28	3497	1.5	1	3185 312
29	4116	1.5	1	3811 305
30	4410	1.5	1	4207 203
31	4459	1.5	1	4247 212
32	4587	1.5	1	4356 231
33	6702	1.5	1	6342 360
34	6985	1.5	1	6748 237
35	6255	1.5	1	6071 184
36	4769	1.5	1	4502 267
37	3564	1.5	1	3401 163
38	3951	1.5	1	3679 272
39	3691	1.5	1	3501 190
40	2711	1.5	1	2495 216
41	1439	1.5	1	1253 186
42	1002	1.5	1	845 157
43	1326	1.5	1	724 602
44	507	1.5	1	306 201
45	676	1.5	1	268 408
46	555	1.5	1	297 258
47	439	1.5	1	259 180
48	822	1.5	1	421 401
49	1074	1.5	1	853 221
50	2001	1.5	1	86 1915
51	395	1.5	1	26 369
52	270	1.5	1	12 258
53	582	1.5	1	7 575
54	108	1.5	1	8 100
55	498	1.5	1	3 495
56	231	1.5	1	6 225
57	151	1.5	1	4 147
58	549	1.5	1	0 549
59	295	1.5	1	0 295
60	1443	1.5	1	2 1441
61	194	1.5	1	5 189
62	251	1.5	1	34 217
63	573	1.5	1	6 567
64	108	1.5	1	9 99
65	145	1.5	1	6 139
66	164	1.5	1	5 159
67	260	1.5	1	5 255
68	437	1.5	1	5 432
69	71	1.5	1	2 69
70	77	1.5	1	2 75
71	41	1.5	1	1 40
72	110	1.5	1	14 96
73	433	1.5	1	9 424
74	159	1.5	1	47 112
75	1390	1.5	1	1181 209
76	63	1.5	1	4 59


RUN STATISTICS FOR INPUT FILE: A-13189-2.end1.fastq.gz
=============================================
25336192 sequences processed in total