## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:04 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12840900	0	0	1988345	1597161	0.154845	157818435

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.136358
2.0	2.183917
3.0	3.149617
4.0	4.039855
5.0	4.860527
6.0	5.617069
7.0	6.314493
8.0	6.957418
9.0	7.550103
10.0	8.096474
11.0	8.60015
12.0	9.064468
13.0	9.492502
14.0	9.887088
15.0	10.250841
16.0	10.586168
17.0	10.895293
18.0	11.180261
19.0	11.442961
20.0	11.685133
21.0	11.908381
22.0	12.114184
23.0	12.303904
24.0	12.4788
25.0	12.640028
26.0	12.788658
27.0	12.925673
28.0	13.051982
29.0	13.16842
30.0	13.27576
31.0	13.374712
32.0	13.465931
33.0	13.550022
34.0	13.627543
35.0	13.699005
36.0	13.764883
37.0	13.825614
38.0	13.881598
39.0	13.933208
40.0	13.980785
41.0	14.024644
42.0	14.065076
43.0	14.102348
44.0	14.136708
45.0	14.168383
46.0	14.197583
47.0	14.224501
48.0	14.249315
49.0	14.272191
50.0	14.293278
51.0	14.312718
52.0	14.330639
53.0	14.34716
54.0	14.362389
55.0	14.376429
56.0	14.389371
57.0	14.401302
58.0	14.412301
59.0	14.42244
60.0	14.431787
61.0	14.440404
62.0	14.448347
63.0	14.455669
64.0	14.46242
65.0	14.468642
66.0	14.474379
67.0	14.479667
68.0	14.484542
69.0	14.489036
70.0	14.493179
71.0	14.496998
72.0	14.500519
73.0	14.503765
74.0	14.506757
75.0	14.509515
76.0	14.512058
77.0	14.514402
78.0	14.516562
79.0	14.518554
80.0	14.520391
81.0	14.522083
82.0	14.523644
83.0	14.525083
84.0	14.526409
85.0	14.527631
86.0	14.528758
87.0	14.529797
88.0	14.530755
89.0	14.531638
90.0	14.532452
91.0	14.533202
92.0	14.533894
93.0	14.534531
94.0	14.535119
95.0	14.535661
96.0	14.536161
97.0	14.536621
98.0	14.537046
99.0	14.537437
100.0	14.537798