SUMMARISING RUN PARAMETERS
==========================
Input filename: Undetermined_L001_R1_001.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.15
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
Output file will be GZIP compressed


This is cutadapt 1.15 with Python 2.7.14+
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA Undetermined_L001_R1_001.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 262.40 s (23 us/read; 2.58 M reads/minute).

=== Summary ===

Total reads processed:              11,279,426
Reads with adapters:                 1,493,643 (13.2%)
Reads written (passing filters):    11,279,426 (100.0%)

Total basepairs processed:   857,236,376 bp
Quality-trimmed:              90,225,611 bp (10.5%)
Total written (filtered):    761,994,530 bp (88.9%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 1493643 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 28.3%
  C: 35.3%
  G: 15.3%
  T: 20.7%
  none/other: 0.3%

Overview of removed sequences
length	count	expect	max.err	error counts
1	1167328	2819856.5	0	1167328
2	169430	704964.1	0	169430
3	56785	176241.0	0	56785
4	12491	44060.3	0	12491
5	6964	11015.1	0	6964
6	1356	2753.8	0	1356
7	1996	688.4	0	1996
8	1908	172.1	0	1908
9	1273	43.0	0	837 436
10	3865	10.8	1	2698 1167
11	1913	2.7	1	210 1703
12	3383	0.7	1	2323 1060
13	2171	0.7	1	1400 771
14	3473	0.7	1	2509 964
15	1607	0.7	1	998 609
16	3639	0.7	1	2776 863
17	823	0.7	1	602 221
18	1205	0.7	1	1002 203
19	253	0.7	1	201 52
20	791	0.7	1	583 208
21	1275	0.7	1	958 317
22	323	0.7	1	252 71
23	1101	0.7	1	912 189
24	212	0.7	1	163 49
25	359	0.7	1	296 63
26	406	0.7	1	331 75
27	351	0.7	1	293 58
28	658	0.7	1	562 96
29	362	0.7	1	310 52
30	95	0.7	1	75 20
31	652	0.7	1	590 62
32	68	0.7	1	40 28
33	575	0.7	1	514 61
34	265	0.7	1	248 17
35	324	0.7	1	305 19
36	439	0.7	1	408 31
37	409	0.7	1	394 15
38	466	0.7	1	443 23
39	376	0.7	1	366 10
40	512	0.7	1	505 7
41	453	0.7	1	445 8
42	488	0.7	1	465 23
43	1476	0.7	1	1454 22
44	193	0.7	1	180 13
45	463	0.7	1	444 19
46	328	0.7	1	311 17
47	564	0.7	1	540 24
48	505	0.7	1	481 24
49	387	0.7	1	375 12
50	1044	0.7	1	1016 28
51	671	0.7	1	659 12
52	855	0.7	1	808 47
53	648	0.7	1	627 21
54	789	0.7	1	775 14
55	1434	0.7	1	1425 9
56	331	0.7	1	322 9
57	1539	0.7	1	1527 12
58	1087	0.7	1	1075 12
59	672	0.7	1	665 7
60	1957	0.7	1	1945 12
61	638	0.7	1	621 17
62	1386	0.7	1	1373 13
63	1961	0.7	1	1941 20
64	1126	0.7	1	1120 6
65	668	0.7	1	662 6
66	1153	0.7	1	1147 6
67	4301	0.7	1	4275 26
68	1183	0.7	1	1174 9
69	2181	0.7	1	2161 20
70	1119	0.7	1	1110 9
71	1981	0.7	1	1956 25
72	1813	0.7	1	1788 25
73	275	0.7	1	242 33
74	363	0.7	1	327 36
75	936	0.7	1	822 114
76	4793	0.7	1	535 4258


RUN STATISTICS FOR INPUT FILE: Undetermined_L001_R1_001.fastq.gz
=============================================
11279426 sequences processed in total