Index of /kundaje/marinovg/oak/various/ENCODE4/CRISPR/2017-11-03-Cas13-gRNA-design
Name
Last modified
Size
Description
Parent Directory
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2016-11-16-refFlat.genes-transcripts.MYC
2017-11-09 20:20
16
Cas13-sgRNAs.ATP6V1G3
2017-11-08 07:15
5.4K
Cas13-sgRNAs.ATP6V1G3-TopHat-2.0.8-GENCODEv25/
2017-11-08 07:56
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Cas13-sgRNAs.ATP6V1G3.UT
2017-11-08 07:09
2.8K
Cas13-sgRNAs.ATP6V1G3.UT-TopHat-2.0.8-GENCODEv25/
2017-11-08 07:56
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Cas13-sgRNAs.ATP6V1G3.UT.fa
2017-11-08 07:39
1.6K
Cas13-sgRNAs.ATP6V1G3.fa
2017-11-08 07:39
3.3K
Cas13-sgRNAs.GATA1
2017-11-29 12:40
281K
Cas13-sgRNAs.GATA1.UT
2017-11-29 04:20
53K
Cas13-sgRNAs.K562.unexpressed.first30
2017-11-28 23:56
71K
Cas13-sgRNAs.MYC
2017-11-29 05:46
140K
Cas13-sgRNAs.MYC-GATA1-2kb-antisense
2017-11-29 22:23
311K
Cas13-sgRNAs.MYC-GATA1-2kb-sense
2017-11-29 22:23
660K
Cas13-sgRNAs.MYC-GATA1-cEnh
2017-11-29 22:24
2.2M
Cas13-sgRNAs.MYC-TopHat-2.0.8-GENCODEv25/
2017-11-09 23:25
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Cas13-sgRNAs.MYC.5G
2017-11-09 20:34
50K
Cas13-sgRNAs.MYC.5G.UT
2017-11-09 22:41
17K
Cas13-sgRNAs.MYC.5G.UT.fa
2017-11-09 23:16
10K
Cas13-sgRNAs.MYC.2016-11-16-refFlat
2017-11-09 23:05
47K
Cas13-sgRNAs.MYC.2016-11-16-refFlat-TopHat-2.0.8-GENCODEv25/
2017-11-09 23:25
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Cas13-sgRNAs.MYC.2016-11-16-refFlat.fa
2017-11-09 23:16
33K
Cas13-sgRNAs.MYC.UT
2017-11-29 02:31
54K
Cas13-sgRNAs.MYC.UT-TopHat-2.0.8-GENCODEv25/
2017-11-09 23:25
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Cas13-sgRNAs.MYC.UT.fa
2017-11-09 23:16
10K
Cas13-sgRNAs.MYC.fa
2017-11-09 23:16
31K
Cas13-sgRNAs.PTPRC
2017-11-08 06:06
9.1K
Cas13-sgRNAs.PTPRC-TopHat-2.0.8-GENCODEV16/
2017-11-08 06:15
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Cas13-sgRNAs.PTPRC-TopHat-2.0.8-GENCODEv25/
2017-11-08 06:54
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Cas13-sgRNAs.PTPRC.UT
2017-11-08 06:09
4.0K
Cas13-sgRNAs.PTPRC.UT-TopHat-2.0.8-GENCODEV16/
2017-11-08 06:26
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Cas13-sgRNAs.PTPRC.UT-TopHat-2.0.8-GENCODEv25/
2017-11-08 06:54
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Cas13-sgRNAs.PTPRC.UT.fa
2017-11-08 06:10
2.3K
Cas13-sgRNAs.PTPRC.fa
2017-11-08 06:10
5.5K
Cas13-sgRNAs.Weissman_CRiNCL_2017.K562.mid30
2017-11-28 23:34
44K
Cas13-sgRNAs.Weissman_CRiNCL_2017.K562.top30neg
2017-11-28 23:31
116K
Cas13-sgRNAs.Weissman_CRiNCL_2017.K562.top30pos
2017-11-28 23:33
135K
Cas13-sgRNAs.Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM.first30
2017-11-29 00:00
59K
Cas13-sgRNAs.Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM.first30.10guides
2017-11-30 10:45
371K
Cas13-sgRNAs.Weissman_genes_CRISPRi_combo.top30neg
2017-11-28 23:57
52K
Cas13-sgRNAs.Weissman_genes_CRISPRi_combo.top30neg.10guides
2017-11-30 10:45
258K
Cas13-sgRNAs.____final_set
2017-11-30 10:46
5.5M
Cas13-sgRNAs.____final_set-TopHat-2.0.8-GENCODEv25/
2017-11-30 11:10
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Cas13-sgRNAs.____final_set.fa
2017-11-30 10:48
3.2M
Cas13-sgRNAs.____final_set.fa.hg38-male.v0.a.mapped.hist
2017-11-30 21:19
2.1M
Cas13-sgRNAs.____final_set.fa.hg38-male.v0.a.unmapped.hist
2017-11-30 21:19
80K
Cas13-sgRNAs.____final_set.fa.hg38-male.v1.a.mapped.hist
2017-11-30 21:19
2.1M
Cas13-sgRNAs.____final_set.fa.hg38-male.v1.a.unmapped.hist
2017-11-30 21:19
63K
Cas13-sgRNAs.____final_set.fa.hg38-male.v2.a.mapped.hist
2017-11-30 21:20
2.1M
Cas13-sgRNAs.____final_set.fa.hg38-male.v2.a.unmapped.hist
2017-11-30 21:19
53K
Cas13-sgRNAs.____final_set.fa.hg38-male.v3.a.Set.sam.hist
2017-11-30 21:35
2.1M
Cas13-sgRNAs.____final_set.fa.hg38-male.v3.a.bam
2017-11-30 20:43
300M
Cas13-sgRNAs.____final_set.fa.hg38-male.v3.a.bam.bai
2017-11-30 20:44
4.5M
Cas13-sgRNAs.____final_set.fa.hg38-male.v3.a.mapped.hist
2017-11-30 21:21
2.1M
Cas13-sgRNAs.____final_set.fa.hg38-male.v3.a.unmapped.hist
2017-11-30 21:20
44K
Cas13-sgRNAs.____final_set.wanted
2017-11-30 21:42
2.0M
Cas13-sgRNAs.____final_set.wanted-TopHat-2.0.8-GENCODEv25/
2017-11-30 22:00
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Cas13-sgRNAs.____final_set.wanted.fa
2017-11-30 21:44
2.9M
Cas13-sgRNAs.____final_set.wanted.non-rRNA
2017-11-30 22:03
1.7M
Cas13-sgRNAs.____final_set.wanted.non-rRNA-TopHat-2.0.8-GENCODEv25/
2017-11-30 22:23
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Cas13-sgRNAs.____final_set.wanted.non-rRNA.fa
2017-11-30 22:03
2.5M
Cas13-sgRNAs.____final_set.wanted.non-rRNA.finalized
2017-11-30 22:25
2.6M
Cas13-sgRNAs.____final_set.wanted.rRNA
2017-11-30 22:03
291K
Cas13-sgRNAs.____final_set.wanted.rRNA.fa
2017-11-30 22:03
387K
Cas13-sgRNAs.____final_set.wanted.rRNA.fa.human-rRNA.v0.a.bam
2017-11-30 22:05
78K
Cas13-sgRNAs.____final_set.wanted.rRNA.fa.human-rRNA.v0.a.bam.bai
2017-11-30 22:06
352
Cas13-sgRNAs.____final_set.wanted.rRNA.finalized
2017-11-30 22:25
652K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.all
2017-11-28 23:22
75M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.lincRNA
2017-11-27 20:12
13M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.lincRNA.UT
2017-11-27 20:08
13M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.processed_pseudogene
2017-11-27 20:14
12M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.protein_coding
2017-11-27 20:14
31M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.protein_coding.IDs0
2017-11-09 00:56
151K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.pseudogene.IDs0
2017-11-10 17:13
88K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.pseudogene.IDs0.UT
2017-11-12 11:25
63K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.snRNA
2017-11-27 20:14
1.4M
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.snoRNA
2017-11-27 20:14
286K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.unitary_pseudogene
2017-11-27 20:14
313K
Cas13-sgRNAs.gencode.v25.annotation.bioTypes.unprocessed_pseudogene
2017-11-27 20:14
2.6M
Cas13-sgRNAs.rRNA-J01866.1-5.8S-antisense
2017-11-29 20:30
1.9K
Cas13-sgRNAs.rRNA-J01866.1-5.8S-sense
2017-11-27 21:22
7.8K
Cas13-sgRNAs.rRNA-M11167.1-28S-antisense
2017-11-27 21:53
18K
Cas13-sgRNAs.rRNA-M11167.1-28S-sense
2017-11-27 21:22
124K
Cas13-sgRNAs.rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit-antisense
2017-11-27 21:22
42K
Cas13-sgRNAs.rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit-isense
2017-11-27 21:22
346K
Cas13-sgRNAs.rRNA-X03205.1-18S-antisense
2017-11-27 21:53
18K
Cas13-sgRNAs.rRNA-X03205.1-18S-sense
2017-11-27 21:23
124K
Cas13-sgRNAs.tiling_screen_safes
2017-11-27 21:41
216K
Cas13sgRNAdesign-UT.sh
2017-11-08 17:29
220K
Cas13sgRNAdesign.condor
2017-11-05 15:48
76K
Cas13sgRNAdesign.sh
2017-11-07 21:11
207K
K562-CAGE-Cytosol-polyA-ENCSR000CIL-ENCFF292DAB.bed
2016-09-26 22:40
889K
K562-CAGE-Cytosol-polyA-ENCSR000CIL-ENCFF292DAB.bed.gz
2016-09-26 22:40
231K
K562-CAGE-Cytosol-polyA-ENCSR000CIL-ENCFF540EYF.bigBed
2016-09-26 22:41
843K
K562-CAGE-ENCSR000CJN-ENCFF359LSQ.bigBed
2017-11-26 18:05
847K
K562-CAGE-ENCSR000CJN-ENCFF698DQS.bed
2017-11-26 18:05
891K
K562-CAGE-ENCSR000CJN-ENCFF698DQS.bed.gz
2017-11-26 18:05
232K
K562-CAGE-Nucleus-polyA-ENCSR000CIL-ENCFF156SGB.bed
2016-08-04 18:52
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K562-CAGE-Nucleus-polyA-ENCSR000CIL-ENCFF156SGB.bed.gz
2016-08-04 18:52
245K
K562-CAGE-Nucleus-polyA-ENCSR000CIL-ENCFF580JAR.bigBed
2016-08-04 18:55
868K
K562-CAGE-nucleolus-ENCSR000CIO-ENCFF805MSB.gff
2016-09-26 22:24
177K
K562-CAGE-nucleolus-ENCSR000CIO-ENCFF805MSB.gff.gz
2016-09-26 22:24
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K562-CAGE-nucleolus-ENCSR000CIO-ENCFF904NOY.bed
2016-09-26 22:25
189K
K562-CAGE-nucleolus-ENCSR000CIO-ENCFF904NOY.bed.gz
2016-09-26 22:25
25K
K562-CAGE-nucleolus-ENCSR000CIO-ENCFF974IKC.bigBed
2016-09-26 22:21
148K
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection1
2017-11-27 07:59
2.0M
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection1-GATA1-MYC.1kb.bed
2017-11-27 08:16
4.6K
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection1-GATA1-MYC.bed
2017-11-27 08:13
4.6K
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection1.rl-hist
2017-11-27 08:03
279
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection2
2017-11-27 07:59
2.2M
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-intersection2.rl-hist
2017-11-27 08:03
24K
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-outersection1
2017-11-27 07:59
4.9M
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE-vs-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM-outersection2
2017-11-27 07:59
1.3M
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE.bed
2017-11-27 07:57
6.9M
K562-DGF-UW-ENCSR000EPC-ENCFF688HLE.bigBed
2017-09-25 21:27
2.3M
K562-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM.bed
2017-11-27 07:57
3.5M
K562-H3K27ac-Broad-ENCSR000AKP-ENCFF045OHM.bigBed
2016-08-12 22:36
2.6M
K562-RAMPAGE-Total-ENCSR000AER-ENCFF069ZON.bed
2016-03-24 22:23
830K
K562-RAMPAGE-Total-ENCSR000AER-ENCFF069ZON.bed.gz
2016-03-24 22:23
218K
K562-RAMPAGE-Total-ENCSR000AER-ENCFF393HND.bigBed
2016-03-24 22:24
817K
K562-RAMPAGE-Total-ENCSR000AER-ENCFF663DTD.bigWig
2016-02-04 01:28
3.0M
K562-RAMPAGE-Total-ENCSR000AER-ENCFF809GTW.bigWig
2016-02-04 01:27
3.0M
K562.genes.TPM.protein_coding.unexpressed.first30.table
2017-11-28 23:56
1.3K
Weissman_CRiNCL_2017.K562.files
2017-11-28 23:09
947
Weissman_CRiNCL_2017.K562.mid30
2017-11-28 23:34
8.9K
Weissman_CRiNCL_2017.K562.mid30.genes_transcripts
2017-11-28 23:34
5.9K
Weissman_CRiNCL_2017.K562.table
2017-11-28 23:10
1.3M
Weissman_CRiNCL_2017.K562.top30neg
2017-11-28 23:30
16K
Weissman_CRiNCL_2017.K562.top30neg.genes_transcripts
2017-11-28 23:31
22K
Weissman_CRiNCL_2017.K562.top30pos
2017-11-28 23:33
18K
Weissman_CRiNCL_2017.K562.top30pos.genes_transcripts
2017-11-28 23:33
16K
Weissman_genes_CRISPRi_combo.castle_effect0
2017-11-28 23:55
722K
Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM
2017-11-28 23:59
13K
Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM.first30
2017-11-29 00:00
211
Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM.first30.genes_transcripts
2017-12-01 08:03
25K
Weissman_genes_CRISPRi_combo.castle_effect0.min20TPM.genes_transcripts
2017-12-01 08:03
1.2M
Weissman_genes_CRISPRi_combo.top30neg
2017-11-28 23:43
2.7K
Weissman_genes_CRISPRi_combo.top30neg.genes_transcripts
2017-12-01 08:03
14K
aiptasia_genome.gff3
2015-07-01 13:20
48M
aiptasia_genome.scaffolds.chrom.sizes
2017-12-01 00:19
0
fulco2016.pdf
2017-11-26 18:17
5.5M
gencode.v19.annotation.genes-transcripts.ATP6V1G3
2017-11-08 06:56
290
gencode.v19.annotation.genes-transcripts.PTPRC
2017-11-03 14:13
954
gencode.v25.annotation.PTPRC.fa
2017-11-08 04:17
24K
gencode.v25.annotation.PTPRC.muscle.blocks.fa
2017-11-08 04:22
75K
gencode.v25.annotation.PTPRC.muscle.fa
2017-11-08 04:21
76K
gencode.v25.annotation.bioTypes.lincRNA.IDs.hist
2017-11-07 21:08
245K
gencode.v25.annotation.bioTypes.processed_pseudogene.IDs.hist
2017-11-07 21:08
308K
gencode.v25.annotation.bioTypes.protein_coding.IDs.hist
2017-11-07 21:08
528K
gencode.v25.annotation.bioTypes.protein_coding.IDs0
2017-11-07 21:09
2.1K
gencode.v25.annotation.bioTypes.pseudogene.IDs.hist
2017-11-07 21:08
1.3K
gencode.v25.annotation.bioTypes.pseudogene.IDs0
2017-11-07 21:09
1.3K
gencode.v25.annotation.bioTypes.snRNA.IDs.hist
2017-11-07 21:08
55K
gencode.v25.annotation.bioTypes.snoRNA.IDs.hist
2017-11-07 21:08
26K
gencode.v25.annotation.bioTypes.unitary_pseudogene.IDs.hist
2017-11-07 21:08
4.3K
gencode.v25.annotation.bioTypes.unprocessed_pseudogene.IDs.hist
2017-11-07 21:08
79K
gencode.v25.annotation.genes.MYC-GATA1
2017-11-27 07:51
100
gencode.v25.annotation.genes.MYC-GATA1-2kb-antisense.genes-transcripts
2017-11-27 11:04
152
gencode.v25.annotation.genes.MYC-GATA1-2kb-sense-antisense.genes-transcripts
2017-11-27 10:58
317
gencode.v25.annotation.genes.MYC-GATA1-2kb-sense-antisense.gtf
2017-11-27 08:18
744
gencode.v25.annotation.genes.MYC-GATA1-2kb-sense.genes-transcripts
2017-11-27 11:04
120
gencode.v25.annotation.genes.MYC-GATA1-cEnh.gtf
2017-11-27 10:59
46K
gencode.v25.annotation.genes.MYC-GATA1-genomic-neighborhoods.bed
2017-11-27 08:13
48
gencode.v25.annotation.genes.MYC-GATA1-vs-K562_TADs.track.hg38-liftOver-intersection2
2017-11-27 08:07
103
gencode.v25.annotation.plus.MYC-GATA1-2kb-sense-antisense.gtf
2017-11-27 11:16
1.2G
gencode.v25.annotation.plus.MYC-GATA1-cEnh.gtf
2017-11-27 11:39
1.2G
gencode.v25.annotation.plus.tiling_screen_safes.gtf
2017-11-27 18:35
1.2G
gencode.v26.annotation.genes-transcripts.ATP6V1G3
2017-11-08 06:59
237
gencode.v26.annotation.genes-transcripts.GATA1
2017-11-29 02:14
106
gencode.v26.annotation.genes-transcripts.MYC
2017-11-09 15:40
344
gencode.v26.annotation.genes.MYC-GATA1
2017-11-27 07:46
100
individual_files/
2017-11-30 10:51
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rRNA-J01866.1-5.8S.genes-transcripts
2017-11-27 20:59
197
rRNA-J01866.1-5.8S.genes-transcripts-antisense
2017-11-27 21:01
141
rRNA-J01866.1-5.8S.genes-transcripts-sense
2017-11-27 21:01
101
rRNA-J01866.1-5.8S.gtf
2017-11-27 21:16
348
rRNA-M11167.1-28S.genes-transcripts
2017-11-27 20:59
189
rRNA-M11167.1-28S.genes-transcripts-antisense
2017-11-27 21:01
137
rRNA-M11167.1-28S.genes-transcripts-sense
2017-11-27 21:01
97
rRNA-M11167.1-28S.gtf
2017-11-27 21:16
340
rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit.genes-transcripts
2017-11-27 20:59
509
rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit.genes-transcripts-antisense
2017-11-27 21:01
297
rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit.genes-transcripts-isense
2017-11-27 21:01
257
rRNA-U13369.1-Human_ribosomal_DNA_complete_repeating_unit.gtf
2017-11-27 21:17
742
rRNA-X03205.1-18S.genes-transcripts
2017-11-27 20:59
189
rRNA-X03205.1-18S.genes-transcripts-antisense
2017-11-27 21:02
137
rRNA-X03205.1-18S.genes-transcripts-sense
2017-11-27 21:02
97
rRNA-X03205.1-18S.gtf
2017-11-27 21:17
340
tiling_screen_safes.bed
2017-11-27 18:26
28K
tiling_screen_safes.hg20-liftOver.50bp-length.bed
2017-11-27 18:29
28K
tiling_screen_safes.hg20-liftOver.50bp-length.genes-transcripts
2017-11-27 18:33
113K
tiling_screen_safes.hg20-liftOver.50bp-length.gtf
2017-11-27 18:32
212K
tiling_screen_safes.hg20-liftOver.bed
2017-11-27 18:26
28K
tiling_screen_safes.hg20-liftOver.rel-hist
2017-11-27 18:27
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tophat2-Cas13-sgRNAs.ATP6V1G3.condor
2017-11-08 07:40
1.5K
tophat2-Cas13-sgRNAs.MYC.condor
2017-11-09 23:21
1.9K
tophat2-Cas13-sgRNAs.PTPRC.condor
2017-11-08 06:32
1.5K
tophat2-Cas13-sgRNAs.____final_set.condor
2017-11-30 10:51
1.1K
z
2017-12-01 05:15
4.5K
z.1.err
2017-12-01 00:19
369
z.1.out
2017-12-01 00:19
0
z.1.sbatch
2017-12-01 00:19
450
zzz.ccc-TopHat-2.0.8-GENCODEv25/
2017-11-30 14:50
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