python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5486-AS_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5486-AS_NRSF.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5487-HS_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5487-HS_NRSF.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5488-UT_NRSF.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5488-UT_NRSF.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5489-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5489-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5490-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5490-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5491-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5491-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5492-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5492-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L5493-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L5493-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize