module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5486-AS_NRSF.2x36mers.unique.bam OUTPUT=L5486-AS_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L5486-AS_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5487-HS_NRSF.2x36mers.unique.bam OUTPUT=L5487-HS_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L5487-HS_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5488-UT_NRSF.2x36mers.unique.bam OUTPUT=L5488-UT_NRSF.2x36mers.unique.dedup.bam METRICS_FILE=L5488-UT_NRSF.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5489-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.bam OUTPUT=L5489-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.dedup.bam METRICS_FILE=L5489-HEK_SPI1_0.75_SPI_ChIP.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5490-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.bam OUTPUT=L5490-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.bam METRICS_FILE=L5490-HEK_SOX2_0.75_SOX_ChIP.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5491-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.bam OUTPUT=L5491-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.bam METRICS_FILE=L5491-HEK_IRF4_0.75_IRF4_ChIP.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5492-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.bam OUTPUT=L5492-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.dedup.bam METRICS_FILE=L5492-HEK_LEF1_0.75_LEF1_ChIP.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true
module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L5493-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.bam OUTPUT=L5493-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.bam METRICS_FILE=L5493-HEK_ALX4_0.75_ALX4-FLAG_ChIP.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true