## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4171-K562_2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4171-K562_2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4171-K562_2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:10 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	390835	5125592	0	20811	4706	0.053248	4499235

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011666
2.0	1.93916
3.0	2.789486
4.0	3.569065
5.0	4.283781
6.0	4.939032
7.0	5.539766
8.0	6.090518
9.0	6.595447
10.0	7.058366
11.0	7.482769
12.0	7.871861
13.0	8.228581
14.0	8.555621
15.0	8.855451
16.0	9.130335
17.0	9.382348
18.0	9.613394
19.0	9.825216
20.0	10.019415
21.0	10.197456
22.0	10.360684
23.0	10.510331
24.0	10.647527
25.0	10.773308
26.0	10.888625
27.0	10.994347
28.0	11.091272
29.0	11.180134
30.0	11.261602
31.0	11.336292
32.0	11.404767
33.0	11.467546
34.0	11.525101
35.0	11.577867
36.0	11.626244
37.0	11.670595
38.0	11.711256
39.0	11.748534
40.0	11.782711
41.0	11.814044
42.0	11.84277
43.0	11.869106
44.0	11.893251
45.0	11.915387
46.0	11.935681
47.0	11.954287
48.0	11.971345
49.0	11.986983
50.0	12.001321
51.0	12.014465
52.0	12.026516
53.0	12.037564
54.0	12.047693
55.0	12.05698
56.0	12.065493
57.0	12.073299
58.0	12.080455
59.0	12.087015
60.0	12.09303
61.0	12.098544
62.0	12.103599
63.0	12.108234
64.0	12.112483
65.0	12.116379
66.0	12.119951
67.0	12.123225
68.0	12.126227
69.0	12.128979
70.0	12.131502
71.0	12.133816
72.0	12.135936
73.0	12.137881
74.0	12.139663
75.0	12.141298
76.0	12.142796
77.0	12.14417
78.0	12.145429
79.0	12.146584
80.0	12.147642
81.0	12.148613
82.0	12.149502
83.0	12.150318
84.0	12.151066
85.0	12.151751
86.0	12.15238
87.0	12.152956
88.0	12.153484
89.0	12.153969
90.0	12.154413
91.0	12.15482
92.0	12.155193
93.0	12.155535
94.0	12.155849
95.0	12.156137
96.0	12.1564
97.0	12.156642
98.0	12.156864
99.0	12.157067
100.0	12.157253