## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4169-K562_1p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4169-K562_1p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4169-K562_1p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:09 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4606226	6299738	0	246131	55133	0.053434	52693748

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011593
2.0	1.938511
3.0	2.787844
4.0	3.566085
5.0	4.279185
6.0	4.932595
7.0	5.531314
8.0	6.079917
9.0	6.582601
10.0	7.043208
11.0	7.465261
12.0	7.851986
13.0	8.206342
14.0	8.531037
15.0	8.828554
16.0	9.101167
17.0	9.350962
18.0	9.579849
19.0	9.789576
20.0	9.981749
21.0	10.157837
22.0	10.319185
23.0	10.467028
24.0	10.602496
25.0	10.726625
26.0	10.840364
27.0	10.944582
28.0	11.040077
29.0	11.127579
30.0	11.207757
31.0	11.281223
32.0	11.34854
33.0	11.410223
34.0	11.466742
35.0	11.518531
36.0	11.565985
37.0	11.609466
38.0	11.649308
39.0	11.685816
40.0	11.719267
41.0	11.749919
42.0	11.778004
43.0	11.803739
44.0	11.82732
45.0	11.848927
46.0	11.868726
47.0	11.886867
48.0	11.90349
49.0	11.918721
50.0	11.932678
51.0	11.945466
52.0	11.957184
53.0	11.967921
54.0	11.977759
55.0	11.986774
56.0	11.995034
57.0	12.002603
58.0	12.009538
59.0	12.015893
60.0	12.021716
61.0	12.027051
62.0	12.03194
63.0	12.03642
64.0	12.040525
65.0	12.044286
66.0	12.047732
67.0	12.05089
68.0	12.053783
69.0	12.056435
70.0	12.058864
71.0	12.06109
72.0	12.06313
73.0	12.064999
74.0	12.066711
75.0	12.068281
76.0	12.069719
77.0	12.071036
78.0	12.072243
79.0	12.073349
80.0	12.074363
81.0	12.075292
82.0	12.076143
83.0	12.076923
84.0	12.077637
85.0	12.078292
86.0	12.078892
87.0	12.079441
88.0	12.079945
89.0	12.080407
90.0	12.080829
91.0	12.081217
92.0	12.081572
93.0	12.081897
94.0	12.082195
95.0	12.082469
96.0	12.082719
97.0	12.082948
98.0	12.083158
99.0	12.083351
100.0	12.083527