## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4168-K562_1p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4168-K562_1p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4168-K562_1p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:09 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	4662441	7878130	0	267180	57215	0.057305	48956876

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011842
2.0	1.931767
3.0	2.768124
4.0	3.528506
5.0	4.219813
6.0	4.848322
7.0	5.419735
8.0	5.939241
9.0	6.411554
10.0	6.840962
11.0	7.231361
12.0	7.586297
13.0	7.908989
14.0	8.202367
15.0	8.469095
16.0	8.711593
17.0	8.932062
18.0	9.132503
19.0	9.314736
20.0	9.480415
21.0	9.631043
22.0	9.767988
23.0	9.892492
24.0	10.005687
25.0	10.108598
26.0	10.202161
27.0	10.287225
28.0	10.364561
29.0	10.434872
30.0	10.498796
31.0	10.556913
32.0	10.609751
33.0	10.657788
34.0	10.701462
35.0	10.741169
36.0	10.777268
37.0	10.810089
38.0	10.839927
39.0	10.867055
40.0	10.891719
41.0	10.914143
42.0	10.934529
43.0	10.953063
44.0	10.969914
45.0	10.985234
46.0	10.999162
47.0	11.011825
48.0	11.023338
49.0	11.033805
50.0	11.043321
51.0	11.051973
52.0	11.059838
53.0	11.066989
54.0	11.073491
55.0	11.079402
56.0	11.084776
57.0	11.089662
58.0	11.094103
59.0	11.098142
60.0	11.101814
61.0	11.105152
62.0	11.108186
63.0	11.110946
64.0	11.113454
65.0	11.115735
66.0	11.117808
67.0	11.119693
68.0	11.121407
69.0	11.122965
70.0	11.124382
71.0	11.12567
72.0	11.126841
73.0	11.127905
74.0	11.128873
75.0	11.129753
76.0	11.130553
77.0	11.13128
78.0	11.131942
79.0	11.132543
80.0	11.133089
81.0	11.133586
82.0	11.134038
83.0	11.134449
84.0	11.134822
85.0	11.135162
86.0	11.13547
87.0	11.135751
88.0	11.136006
89.0	11.136238
90.0	11.136449
91.0	11.136641
92.0	11.136815
93.0	11.136973
94.0	11.137117
95.0	11.137248
96.0	11.137368
97.0	11.137476
98.0	11.137574
99.0	11.137664
100.0	11.137745