## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4164-K562_0.5p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4164-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4164-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:10 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	5626864	6407826	0	263503	65789	0.046829	76342913

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.0114
2.0	1.950935
3.0	2.823712
4.0	3.634475
5.0	4.387629
6.0	5.087268
7.0	5.737195
8.0	6.340941
9.0	6.901789
10.0	7.422786
11.0	7.906764
12.0	8.356353
13.0	8.773997
14.0	9.161966
15.0	9.522367
16.0	9.85716
17.0	10.168165
18.0	10.457072
19.0	10.72545
20.0	10.974759
21.0	11.206354
22.0	11.421493
23.0	11.621345
24.0	11.806996
25.0	11.979457
26.0	12.139663
27.0	12.288486
28.0	12.426734
29.0	12.55516
30.0	12.67446
31.0	12.785283
32.0	12.888232
33.0	12.983866
34.0	13.072704
35.0	13.15523
36.0	13.231893
37.0	13.303108
38.0	13.369263
39.0	13.430717
40.0	13.487805
41.0	13.540837
42.0	13.5901
43.0	13.635863
44.0	13.678374
45.0	13.717865
46.0	13.75455
47.0	13.788628
48.0	13.820285
49.0	13.849692
50.0	13.87701
51.0	13.902386
52.0	13.92596
53.0	13.947859
54.0	13.968201
55.0	13.987099
56.0	14.004653
57.0	14.02096
58.0	14.036109
59.0	14.050181
60.0	14.063253
61.0	14.075396
62.0	14.086677
63.0	14.097156
64.0	14.10689
65.0	14.115933
66.0	14.124333
67.0	14.132137
68.0	14.139385
69.0	14.146119
70.0	14.152375
71.0	14.158185
72.0	14.163583
73.0	14.168598
74.0	14.173256
75.0	14.177583
76.0	14.181603
77.0	14.185337
78.0	14.188806
79.0	14.192028
80.0	14.195021
81.0	14.197802
82.0	14.200385
83.0	14.202785
84.0	14.205014
85.0	14.207084
86.0	14.209008
87.0	14.210795
88.0	14.212454
89.0	14.213996
90.0	14.215429
91.0	14.216759
92.0	14.217995
93.0	14.219144
94.0	14.22021
95.0	14.221201
96.0	14.222122
97.0	14.222977
98.0	14.223771
99.0	14.224509
100.0	14.225194