## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4162-K562_0.5p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4162-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4162-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:09 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7846543	9902302	0	436655	95666	0.055649	85487928

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011785
2.0	1.934837
3.0	2.776939
4.0	3.545189
5.0	4.246064
6.0	4.885473
7.0	5.468806
8.0	6.000982
9.0	6.486486
10.0	6.929412
11.0	7.333494
12.0	7.702138
13.0	8.038453
14.0	8.345273
15.0	8.625185
16.0	8.880549
17.0	9.113518
18.0	9.326056
19.0	9.519954
20.0	9.696848
21.0	9.858228
22.0	10.005455
23.0	10.139771
24.0	10.262307
25.0	10.374097
26.0	10.476083
27.0	10.569125
28.0	10.654008
29.0	10.731446
30.0	10.802093
31.0	10.866544
32.0	10.925343
33.0	10.978985
34.0	11.027923
35.0	11.07257
36.0	11.1133
37.0	11.150459
38.0	11.184359
39.0	11.215286
40.0	11.2435
41.0	11.269241
42.0	11.292723
43.0	11.314147
44.0	11.333691
45.0	11.351522
46.0	11.367789
47.0	11.382629
48.0	11.396168
49.0	11.408519
50.0	11.419788
51.0	11.430068
52.0	11.439446
53.0	11.448002
54.0	11.455808
55.0	11.462929
56.0	11.469425
57.0	11.475352
58.0	11.480759
59.0	11.485692
60.0	11.490192
61.0	11.494298
62.0	11.498043
63.0	11.50146
64.0	11.504578
65.0	11.507422
66.0	11.510016
67.0	11.512383
68.0	11.514543
69.0	11.516513
70.0	11.51831
71.0	11.51995
72.0	11.521446
73.0	11.52281
74.0	11.524055
75.0	11.525191
76.0	11.526227
77.0	11.527173
78.0	11.528035
79.0	11.528822
80.0	11.52954
81.0	11.530195
82.0	11.530792
83.0	11.531337
84.0	11.531834
85.0	11.532288
86.0	11.532702
87.0	11.533079
88.0	11.533424
89.0	11.533738
90.0	11.534025
91.0	11.534286
92.0	11.534525
93.0	11.534742
94.0	11.534941
95.0	11.535122
96.0	11.535287
97.0	11.535438
98.0	11.535576
99.0	11.535701
100.0	11.535816